plot_timeSeries: Time series plot (multifaceted)

In clockSim: Streamlined Simulation of Circadian Gene Networks

Time series plot (multifaceted)

Description

Provides convenience function to plot simulation trajectory of result from one run as time series. Supports plotting multiple states in faceted plot.

Usage

plot_timeSeries(df_result, start_time, end_time, sample_time, tick_time, ...)

Arguments

df_result	Data frame containing results to plot. Must have column $time.
start_time	Plot start time.
end_time	Plot end time.
sample_time	Time interval to subset data.
tick_time	X-axis label break interval time (default 2*sample_time).
...	... <tidy-select> Columns to plot.

Details

Support the following features:

1. flexible start-end time of the series by start_time and end_time.

2. row subset of data by a fixed sample_time (useful when time step is small for numerical precision).

3. flexible time tick label spacing by tick_time.

4. states to plot are selected by tidy-select.

Please note that this function does not attempt to do exhaustive sanity check of parameters Make sure yourself that parameters make sense (e.g., end-start time must be longer than sample_time and tick_time, etc.)

Value

ggplot object of faceted time series

Examples

vignette("clock-models", "clockSim")

clockSim documentation built on April 11, 2025, 5:40 p.m.