coal_to_tree: Generate tree from coalescence times
In cloneRate: Estimate Growth Rates from Phylogenetic Trees
coal_to_tree R Documentation
Generate tree from coalescence times
Description
generates a tree from a vector of coalescence times by randomly
merging lineages.
Usage
coal_to_tree(coal_times)
Arguments
coal_times
A numeric vector of coalescence times
Value
An ape object of class "phylo" representing the ultrametric
phylogenetic tree with edge lengths in units of time.
Examples
# Generate an ape phylo tree with n tips from a vector of n-1 coalescence times
randomCoalTimes <- c(9.3, 7.8, 10.15, 11.23, 9.4, 8.8, 10.01, 13)
tree <- coal_to_tree(randomCoalTimes)
cloneRate documentation built on Sept. 22, 2023, 5:09 p.m.
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| coal_to_tree | R Documentation |
Generate tree from coalescence times
Description
generates a tree from a vector of coalescence times by randomly merging lineages.
Usage
coal_to_tree(coal_times)
Arguments
coal_times |
A numeric vector of coalescence times |
Value
An ape object of class "phylo" representing the ultrametric phylogenetic tree with edge lengths in units of time.
Examples
# Generate an ape phylo tree with n tips from a vector of n-1 coalescence times
randomCoalTimes <- c(9.3, 7.8, 10.15, 11.23, 9.4, 8.8, 10.01, 13)
tree <- coal_to_tree(randomCoalTimes)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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