clusterhap: Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.

Package details

AuthorGaston Quero <[email protected]> and Sebastian Simondi <[email protected]> , with contributions from Victoria Bonnecarrere and Lucia Gutierrez
MaintainerGaston Quero <[email protected]>
Package repositoryView on CRAN
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clusterhap documentation built on May 1, 2019, 10:39 p.m.