clustermole_overlaps: Cell types based on overlap of marker genes
In clustermole: Unbiased Single-Cell Transcriptomic Data Cell Type Identification
Description
Usage
Arguments
Value
Examples
Description
Perform overrepresentation analysis for a set of genes compared to all cell type signatures.
Usage
1
clustermole_overlaps(genes, species)
Arguments
genes
A vector of genes.
species
Species: hs for human or mm for mouse.
Value
A data frame of enrichment results with hypergeometric test p-values.
Examples
1
2
3
my_genes <- c("CD2", "CD3D", "CD3E", "CD3G", "TRAC", "TRBC2", "LTB")
my_overlaps <- clustermole_overlaps(genes = my_genes, species = "hs")
head(my_overlaps)
clustermole documentation built on Jan. 26, 2021, 9:05 a.m.
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Description Usage Arguments Value Examples
Description
Perform overrepresentation analysis for a set of genes compared to all cell type signatures.
Usage
1 | clustermole_overlaps(genes, species)
|
Arguments
genes |
A vector of genes. |
species |
Species: |
Value
A data frame of enrichment results with hypergeometric test p-values.
Examples
1 2 3 | my_genes <- c("CD2", "CD3D", "CD3E", "CD3G", "TRAC", "TRBC2", "LTB")
my_overlaps <- clustermole_overlaps(genes = my_genes, species = "hs")
head(my_overlaps)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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