clusternomics: Integrative Clustering for Heterogeneous Biomedical Datasets

Integrative context-dependent clustering for heterogeneous biomedical datasets. Identifies local clustering structures in related datasets, and a global clusters that exist across the datasets.

Author
Evelina Gabasova [aut, cre], John Reid [ctb], Lorenz Wernisch [ctb]
Date of publication
2016-08-01 17:01:02
Maintainer
Evelina Gabasova <egabasova@gmail.com>
License
MIT + file LICENSE
Version
0.1.0
URLs

View on CRAN

Man pages

clusterSizes
Estimate sizes of clusters from global cluster assignments.
coclusteringMatrix
Compute the posterior co-clustering matrix from global...
contextCluster
Clusternomics: Context-dependent clustering
empiricalBayesPrior
Fit an empirical Bayes prior to the data
generatePrior
Generate a basic prior distribution for the datasets.
generateTestData_1D
Generate simulated 1D dataset for testing
generateTestData_2D
Generate simulated 2D dataset for testing
numberOfClusters
Estimate number of clusters from global cluster assignments.

Files in this package

clusternomics
clusternomics/inst
clusternomics/inst/doc
clusternomics/inst/doc/using-clusternomics.Rmd
clusternomics/inst/doc/using-clusternomics.html
clusternomics/inst/doc/using-clusternomics.R
clusternomics/tests
clusternomics/tests/testthat.R
clusternomics/tests/testthat
clusternomics/tests/testthat/test.clusternomics.R
clusternomics/tests/testthat/test.clusternomics.globalBehaviour.R
clusternomics/NAMESPACE
clusternomics/R
clusternomics/R/generatePrior.R
clusternomics/R/empiricalBayesPrior.R
clusternomics/R/generateTestData.R
clusternomics/R/clusternomics.R
clusternomics/R/processResults.R
clusternomics/vignettes
clusternomics/vignettes/using-clusternomics.Rmd
clusternomics/README.md
clusternomics/MD5
clusternomics/build
clusternomics/build/vignette.rds
clusternomics/DESCRIPTION
clusternomics/man
clusternomics/man/numberOfClusters.Rd
clusternomics/man/generateTestData_2D.Rd
clusternomics/man/coclusteringMatrix.Rd
clusternomics/man/contextCluster.Rd
clusternomics/man/generatePrior.Rd
clusternomics/man/empiricalBayesPrior.Rd
clusternomics/man/generateTestData_1D.Rd
clusternomics/man/clusterSizes.Rd
clusternomics/LICENSE