Files in clustur
Clustering

MD5

NAMESPACE

DESCRIPTION

R/RcppExports.R R/cluster.R R/distance_object-getters.R R/catch-routine-registration.R R/cluster_data_converters.R R/clustur-package.R R/cluster_object-getters.R

src/MatrixAdapterTestFixture.cpp

src/OptiData.cpp

src/CountTableAdapter.cpp

src/OptimatrixAdapter.cpp

src/test-runner.cpp

src/DistanceFileReader.cpp

src/test-Shared_File_Builder.cpp

src/AverageLinkage.cpp

src/OptiMatrix.cpp

src/RAbundVector.cpp

src/RcppExports.cpp

src/OptiClusterDataTestFixture.cpp

src/test-data_frame_adapter.cpp

src/Utils.cpp

src/test-OptiCluster_data.cpp

src/test-matrix_adapter.cpp

src/ClusterDataTestFixture.cpp

src/OptimatrixAdapterTestFixture.cpp

src/OptiClusterTestFixture.cpp

src/DataFrameAdapterTestFixture.cpp

src/SharedFileBuilderTestFixture.cpp

src/SparseDistanceMatrix.cpp

src/test-utils.cpp

src/ListVector.cpp

src/ReadPhylipMatrix.cpp

src/test-column_reader_test_fixture.cpp

src/ListVectorTestFixture.cpp

src/Cluster.cpp

src/WeightedLinkage.cpp

src/ClusterTestFixture.cpp

src/SharedFileTestFixture.cpp

src/MatrixAdapter.cpp

src/CountTableAdapterTestFixture.cpp

src/OpticlusterData.cpp

src/ColumnReaderTestFixture.cpp

src/test-sparse_matrix.cpp

src/PhylipReaderTestFixture.cpp

src/RAbundVectorTestFixture.cpp

src/DataFrameAdapter.cpp

src/SingleLinkage.cpp

src/test-count_table_adapter.cpp

src/test-optimatrix-adapter.cpp

src/ClusterData.cpp

src/OptiCluster.cpp

src/ClusterCommand.cpp

src/test-cluster_export.cpp

src/test-Shared_File.cpp

src/OptiDataTestFixture.cpp

src/SparseMatrixTestFixture.cpp

src/test-list-vector.cpp

src/ClusterExportTestFixture.cpp

src/test-cluster.cpp

src/SharedFile.cpp

src/test-Cluster_Data.cpp

src/test-rabund_vector.cpp

src/SharedFileBuilder.cpp

src/test-read_phylip.cpp

src/ColumnDistanceMatrixReader.cpp

src/test-opticluster.cpp

src/main.cpp

src/CompleteLinkage.cpp

src/test-optidata.cpp

src/UtilsTestFixture.cpp

src/Adapters/MatrixAdapter.h

src/Adapters/DataFrameAdapter.h

src/Adapters/DistanceFileReader.h

src/Adapters/CountTableAdapter.h

src/Adapters/OptimatrixAdapter.h

src/Tests/ClusterExportTestFixture.h

src/Tests/MatrixAdapterTestFixture.h

src/Tests/ColumnReaderTestFixture.h

src/Tests/OptiClusterDataTestFixture.h

src/Tests/UtilsTestFixture.h

src/Tests/OptiDataTestFixture.h

src/Tests/OptimatrixAdapterTestFixture.h

src/Tests/SharedFileBuilderTestFixture.h

src/Tests/ClusterTestFixture.h

src/Tests/ListVectorTestFixture.h

src/Tests/OptiClusterTestFixture.h

src/Tests/SharedFileTestFixture.h

src/Tests/PhylipReaderTestFixture.h

src/Tests/SparseMatrixTestFixture.h

src/Tests/CountTableAdapterTestFixture.h

src/Tests/TestFixture.h

src/Tests/DataFrameAdapterTestFixture.h

src/Tests/RAbundVectorTestFixture.h

src/Tests/ClusterDataTestFixture.h

src/MothurDependencies/ClusterData.h

src/MothurDependencies/CountTable.h

src/MothurDependencies/ClusterMetric.h

src/MothurDependencies/ClusterCommand.h

src/MothurDependencies/CompleteLinkage.h

src/MothurDependencies/OptiCluster.h

src/MothurDependencies/ColumnDistanceMatrixReader.h

src/MothurDependencies/SharedFile.h

src/MothurDependencies/ClusterExport.h

src/MothurDependencies/OpticlusterData.h

src/MothurDependencies/OptiMatrix.h

src/MothurDependencies/ReadPhylipMatrix.h

src/MothurDependencies/ListVector.h

src/MothurDependencies/AverageLinkage.h

src/MothurDependencies/Utils.h

src/MothurDependencies/OptiData.h

src/MothurDependencies/SharedFileBuilder.h

src/MothurDependencies/WeightedLinkage.h

src/MothurDependencies/SparseDistanceMatrix.h

src/MothurDependencies/RAbundVector.h

src/MothurDependencies/ClusterMetric.cpp

src/MothurDependencies/SingleLinkage.h

src/MothurDependencies/PDistCell.h

src/MothurDependencies/OtuAbundancePair.h

src/MothurDependencies/DataVector.h

src/MothurDependencies/Cluster.h

src/MothurDependencies/Metrics/ppv.hpp

src/MothurDependencies/Metrics/tptn.hpp

src/MothurDependencies/Metrics/tp.hpp

src/MothurDependencies/Metrics/specificity.hpp

src/MothurDependencies/Metrics/npv.hpp

src/MothurDependencies/Metrics/fp.hpp

src/MothurDependencies/Metrics/tn.hpp

src/MothurDependencies/Metrics/accuracy.hpp

src/MothurDependencies/Metrics/fpfn.hpp

src/MothurDependencies/Metrics/f1score.hpp

src/MothurDependencies/Metrics/fdr.hpp

src/MothurDependencies/Metrics/fn.hpp

src/MothurDependencies/Metrics/mcc.hpp

src/MothurDependencies/Metrics/sensitivity.hpp

inst/doc/clustur.Rmd inst/doc/clustur.R

inst/doc/clustur.html

inst/extdata/amazon.sparse.count_table

inst/extdata/amazon.full.count_table

inst/extdata/amazon_column.dist

inst/extdata/amazon_phylip.dist

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-cpp.R tests/testthat/test-test-opticluster.R tests/testthat/test-cluster_object-getters.R tests/testthat/test-distance_object-getters.R

tests/testthat/extdata/amazon_opti_results.RDS

tests/testthat/extdata/abundance_results_opticluster.csv

tests/testthat/extdata/amazon.count_table

tests/testthat/extdata/amazon.sparse.count_table

tests/testthat/extdata/amazon.full.count_table

tests/testthat/extdata/amazon_column.dist

tests/testthat/extdata/amazon_phylip.dist

vignettes/clustur.Rmd man/get_distance_df.Rd man/cluster.Rd man/get_count_table.Rd man/example_path.Rd man/get_cutoff.Rd man/get_bins.Rd man/get_metrics.Rd man/read_count.Rd man/get_abundance.Rd man/validate_count_table.Rd man/split_clusters_to_list.Rd man/create_sparse_matrix.Rd man/read_dist.Rd man/clustur-package.Rd

clustur documentation built on April 15, 2025, 1:33 a.m.

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Clustering

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Clustering

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clustur Clustering

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clustur
Clustering

Files in clustur
Clustering