get_abundance: Get Shared
In clustur: Clustering

get_abundance

R Documentation

Get Shared

Description

GetShared returns the generated abundance 'data.frame' from the 'cluster()' function

Usage

get_abundance(cluster_data)

Arguments

cluster_data

The output from the 'cluster()' function.

Value

a shared data.frame

Examples

cutoff <- 0.2
count_table <- read_count(example_path("amazon.full.count_table"))
distance_data <- read_dist(example_path("amazon_column.dist"),
                           count_table, cutoff, FALSE)
df_clusters <- cluster(distance_data, cutoff, method = "opticlust")
shared <- get_abundance(df_clusters)

clustur documentation built on April 15, 2025, 1:33 a.m.