plot_prediction: plot_prediction

In coda4microbiome: Compositional Data Analysis for Microbiome Studies

plot_prediction

Description

Plot of the predictions of a fitted model: Multiple box-plot and density plots for binary outcomes and Regression plot for continuous outcome

Usage

plot_prediction(prediction, y, strata = NULL, showPlots = TRUE)

Arguments

prediction	the fitted values of predictions for the model
y	outcome (binary or continuous); data type: numeric, character or factor vector
strata	stratification variable (default = NULL)
showPlots	if TRUE, shows the plots (default = TRUE)

Value

prediction plot

Author(s)

M. Calle - T. Susin

Examples

# prediction plot for the log-ratio between columns 3 and 32 on HIV status

data(HIV, package = "coda4microbiome")

x<-impute_zeros(x_HIV)

lr<-log(x[,3])-log(x[,32])

plot_prediction(lr, y_HIV)

coda4microbiome documentation built on Sept. 11, 2024, 8 p.m.