Doubs: The Doubs fish data
In codep: Multiscale Codependence Analysis
Description
Usage
Format
Details
Source
References
See Also
Examples
Description
Fish community composition of the Doubs River, France.
Usage
1
Format
Contains three matrices:
Doubs.fish the abundance of 27 fish species.
Doubs.env 9 environmental variables (all quantitative).
Doubs.geo geographic information of the samples.
Details
Values in Doubs.fish are counts of individuals of each of 27
species observed in a set of 30 sites located along the 453 km long
Doubs River, France (see Verneaux 1973 for further details about
fishing methods and effort).
Doubs.env contains 11 quantitative variables, namely the slope
(slo 1/1000) and mean minimum discharge (flo m³/s) of
the river, the pH of the water, its harness (Calcium concentration;
har; mg/L), phosphate (pho; mg/L), nitrate (nit;
mg/L), and ammonium (amm; mg/L), concentration as well as its
dissolved oxygen (oxy; mg/L) and biological oxygen demand
(bdo; mg/L).
Doubs.geo contains geographical information. Lon, the
longitude and Lat, the latitude of the sample (degree) as well
as DFS, its distance from the source of the river (km) and
Alt, altitude (m above see level).
Source
Verneaux, 1973
References
Verneaux J. 1973. - Cours d'eau de Franche-Comté (Massif du
Jura). Recherches écologiques sur le réseau hydrographique du
Doubs. Essai de biotypologie. Thèse d'état, Besançon. 257 p.)
Verneaux, J.; Schmitt, V.; Verneaux, V. & Prouteau, C. 2003. Benthic
insects and fish of the Doubs River system: typological traits and the
development of a species continuum in a theoretically extrapolated
watercourse. Hydrobiologia 490: 60-74
See Also
Borcard, D.; Gillet, F. & Legendre, P. 2011. Numerical Ecology with
R. Springer, New-York, NY, USA.
Examples
1
2
3
4
Example output
CHA TRU VAI LOC OMB
Min. :0.00 Min. :0.00 Min. :0.000 Min. :0.000 Min. :0.00
1st Qu.:0.00 1st Qu.:0.00 1st Qu.:0.000 1st Qu.:1.000 1st Qu.:0.00
Median :0.00 Median :1.00 Median :3.000 Median :2.000 Median :0.00
Mean :0.50 Mean :1.90 Mean :2.267 Mean :2.433 Mean :0.50
3rd Qu.:0.75 3rd Qu.:3.75 3rd Qu.:4.000 3rd Qu.:4.000 3rd Qu.:0.75
Max. :3.00 Max. :5.00 Max. :5.000 Max. :5.000 Max. :4.00
BLA HOT TOX VAN
Min. :0.0000 Min. :0.0 Min. :0.0000 Min. :0.000
1st Qu.:0.0000 1st Qu.:0.0 1st Qu.:0.0000 1st Qu.:0.000
Median :0.0000 Median :0.0 Median :0.0000 Median :1.000
Mean :0.6333 Mean :0.6 Mean :0.8667 Mean :1.433
3rd Qu.:0.7500 3rd Qu.:1.0 3rd Qu.:2.0000 3rd Qu.:2.000
Max. :5.0000 Max. :3.0 Max. :4.0000 Max. :5.000
CHE BAR SPI GOU BRO
Min. :0.000 Min. :0.000 Min. :0.0 Min. :0.000 Min. :0.000
1st Qu.:1.000 1st Qu.:0.000 1st Qu.:0.0 1st Qu.:0.000 1st Qu.:0.000
Median :2.000 Median :0.000 Median :0.0 Median :1.000 Median :1.000
Mean :1.867 Mean :1.433 Mean :0.9 Mean :1.833 Mean :1.333
3rd Qu.:3.000 3rd Qu.:3.000 3rd Qu.:1.0 3rd Qu.:3.750 3rd Qu.:2.000
Max. :5.000 Max. :5.000 Max. :5.0 Max. :5.000 Max. :5.000
PER BOU PSO ROT CAR
Min. :0.0 Min. :0.0 Min. :0.0000 Min. :0.0 Min. :0.0000
1st Qu.:0.0 1st Qu.:0.0 1st Qu.:0.0000 1st Qu.:0.0 1st Qu.:0.0000
Median :0.5 Median :0.0 Median :0.0000 Median :0.0 Median :0.0000
Mean :1.2 Mean :1.1 Mean :0.9667 Mean :0.7 Mean :0.8333
3rd Qu.:2.0 3rd Qu.:2.0 3rd Qu.:1.7500 3rd Qu.:1.0 3rd Qu.:1.0000
Max. :5.0 Max. :5.0 Max. :5.0000 Max. :5.0 Max. :5.0000
TAN BCO PCH GRE GAR
Min. :0.0 Min. :0.0000 Min. :0.0 Min. :0.000 Min. :0.0
1st Qu.:0.0 1st Qu.:0.0000 1st Qu.:0.0 1st Qu.:0.000 1st Qu.:0.0
Median :1.0 Median :0.0000 Median :0.0 Median :0.000 Median :1.0
Mean :1.5 Mean :0.8667 Mean :0.6 Mean :1.267 Mean :2.1
3rd Qu.:3.0 3rd Qu.:1.0000 3rd Qu.:0.0 3rd Qu.:2.000 3rd Qu.:5.0
Max. :5.0 Max. :5.0000 Max. :5.0 Max. :5.000 Max. :5.0
BBO ABL ANG
Min. :0.000 Min. :0.0 Min. :0.00
1st Qu.:0.000 1st Qu.:0.0 1st Qu.:0.00
Median :0.000 Median :0.0 Median :0.00
Mean :1.033 Mean :1.9 Mean :0.90
3rd Qu.:1.750 3rd Qu.:5.0 3rd Qu.:1.75
Max. :5.000 Max. :5.0 Max. :5.00
slo flo pH har
Min. : 0.200 Min. : 0.84 Min. :7.700 Min. : 40.00
1st Qu.: 0.525 1st Qu.: 4.20 1st Qu.:7.925 1st Qu.: 84.25
Median : 1.200 Median :22.10 Median :8.000 Median : 89.00
Mean : 3.497 Mean :22.20 Mean :8.050 Mean : 86.10
3rd Qu.: 2.875 3rd Qu.:28.57 3rd Qu.:8.100 3rd Qu.: 96.75
Max. :48.000 Max. :69.00 Max. :8.600 Max. :110.00
pho nit amm oxy
Min. :0.0100 Min. :0.150 Min. :0.0000 Min. : 4.100
1st Qu.:0.1250 1st Qu.:0.505 1st Qu.:0.0000 1st Qu.: 8.025
Median :0.2850 Median :1.600 Median :0.1000 Median :10.200
Mean :0.5577 Mean :1.654 Mean :0.2093 Mean : 9.390
3rd Qu.:0.5600 3rd Qu.:2.425 3rd Qu.:0.2000 3rd Qu.:10.900
Max. :4.2200 Max. :6.200 Max. :1.8000 Max. :12.400
bdo
Min. : 1.300
1st Qu.: 2.725
Median : 4.150
Mean : 5.117
3rd Qu.: 5.275
Max. :16.700
Lon Lat DFS Alt
Min. :5.083 Min. :46.71 Min. : 0.30 Min. :172.0
1st Qu.:6.142 1st Qu.:46.91 1st Qu.: 54.45 1st Qu.:248.0
Median :6.346 Median :47.19 Median :175.20 Median :395.0
Mean :6.359 Mean :47.13 Mean :188.23 Mean :481.6
3rd Qu.:6.784 3rd Qu.:47.33 3rd Qu.:301.73 3rd Qu.:782.0
Max. :7.168 Max. :47.48 Max. :453.00 Max. :934.0
codep documentation built on May 2, 2019, 3:45 p.m.
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Description Usage Format Details Source References See Also Examples
Description
Fish community composition of the Doubs River, France.
Usage
1 |
Format
Contains three matrices:
Doubs.fish the abundance of 27 fish species.
Doubs.env 9 environmental variables (all quantitative).
Doubs.geo geographic information of the samples.
Details
Values in Doubs.fish are counts of individuals of each of 27
species observed in a set of 30 sites located along the 453 km long
Doubs River, France (see Verneaux 1973 for further details about
fishing methods and effort).
Doubs.env contains 11 quantitative variables, namely the slope
(slo 1/1000) and mean minimum discharge (flo m³/s) of
the river, the pH of the water, its harness (Calcium concentration;
har; mg/L), phosphate (pho; mg/L), nitrate (nit;
mg/L), and ammonium (amm; mg/L), concentration as well as its
dissolved oxygen (oxy; mg/L) and biological oxygen demand
(bdo; mg/L).
Doubs.geo contains geographical information. Lon, the
longitude and Lat, the latitude of the sample (degree) as well
as DFS, its distance from the source of the river (km) and
Alt, altitude (m above see level).
Source
Verneaux, 1973
References
Verneaux J. 1973. - Cours d'eau de Franche-Comté (Massif du Jura). Recherches écologiques sur le réseau hydrographique du Doubs. Essai de biotypologie. Thèse d'état, Besançon. 257 p.)
Verneaux, J.; Schmitt, V.; Verneaux, V. & Prouteau, C. 2003. Benthic insects and fish of the Doubs River system: typological traits and the development of a species continuum in a theoretically extrapolated watercourse. Hydrobiologia 490: 60-74
See Also
Borcard, D.; Gillet, F. & Legendre, P. 2011. Numerical Ecology with R. Springer, New-York, NY, USA.
Examples
1 2 3 4 |
Example output
CHA TRU VAI LOC OMB
Min. :0.00 Min. :0.00 Min. :0.000 Min. :0.000 Min. :0.00
1st Qu.:0.00 1st Qu.:0.00 1st Qu.:0.000 1st Qu.:1.000 1st Qu.:0.00
Median :0.00 Median :1.00 Median :3.000 Median :2.000 Median :0.00
Mean :0.50 Mean :1.90 Mean :2.267 Mean :2.433 Mean :0.50
3rd Qu.:0.75 3rd Qu.:3.75 3rd Qu.:4.000 3rd Qu.:4.000 3rd Qu.:0.75
Max. :3.00 Max. :5.00 Max. :5.000 Max. :5.000 Max. :4.00
BLA HOT TOX VAN
Min. :0.0000 Min. :0.0 Min. :0.0000 Min. :0.000
1st Qu.:0.0000 1st Qu.:0.0 1st Qu.:0.0000 1st Qu.:0.000
Median :0.0000 Median :0.0 Median :0.0000 Median :1.000
Mean :0.6333 Mean :0.6 Mean :0.8667 Mean :1.433
3rd Qu.:0.7500 3rd Qu.:1.0 3rd Qu.:2.0000 3rd Qu.:2.000
Max. :5.0000 Max. :3.0 Max. :4.0000 Max. :5.000
CHE BAR SPI GOU BRO
Min. :0.000 Min. :0.000 Min. :0.0 Min. :0.000 Min. :0.000
1st Qu.:1.000 1st Qu.:0.000 1st Qu.:0.0 1st Qu.:0.000 1st Qu.:0.000
Median :2.000 Median :0.000 Median :0.0 Median :1.000 Median :1.000
Mean :1.867 Mean :1.433 Mean :0.9 Mean :1.833 Mean :1.333
3rd Qu.:3.000 3rd Qu.:3.000 3rd Qu.:1.0 3rd Qu.:3.750 3rd Qu.:2.000
Max. :5.000 Max. :5.000 Max. :5.0 Max. :5.000 Max. :5.000
PER BOU PSO ROT CAR
Min. :0.0 Min. :0.0 Min. :0.0000 Min. :0.0 Min. :0.0000
1st Qu.:0.0 1st Qu.:0.0 1st Qu.:0.0000 1st Qu.:0.0 1st Qu.:0.0000
Median :0.5 Median :0.0 Median :0.0000 Median :0.0 Median :0.0000
Mean :1.2 Mean :1.1 Mean :0.9667 Mean :0.7 Mean :0.8333
3rd Qu.:2.0 3rd Qu.:2.0 3rd Qu.:1.7500 3rd Qu.:1.0 3rd Qu.:1.0000
Max. :5.0 Max. :5.0 Max. :5.0000 Max. :5.0 Max. :5.0000
TAN BCO PCH GRE GAR
Min. :0.0 Min. :0.0000 Min. :0.0 Min. :0.000 Min. :0.0
1st Qu.:0.0 1st Qu.:0.0000 1st Qu.:0.0 1st Qu.:0.000 1st Qu.:0.0
Median :1.0 Median :0.0000 Median :0.0 Median :0.000 Median :1.0
Mean :1.5 Mean :0.8667 Mean :0.6 Mean :1.267 Mean :2.1
3rd Qu.:3.0 3rd Qu.:1.0000 3rd Qu.:0.0 3rd Qu.:2.000 3rd Qu.:5.0
Max. :5.0 Max. :5.0000 Max. :5.0 Max. :5.000 Max. :5.0
BBO ABL ANG
Min. :0.000 Min. :0.0 Min. :0.00
1st Qu.:0.000 1st Qu.:0.0 1st Qu.:0.00
Median :0.000 Median :0.0 Median :0.00
Mean :1.033 Mean :1.9 Mean :0.90
3rd Qu.:1.750 3rd Qu.:5.0 3rd Qu.:1.75
Max. :5.000 Max. :5.0 Max. :5.00
slo flo pH har
Min. : 0.200 Min. : 0.84 Min. :7.700 Min. : 40.00
1st Qu.: 0.525 1st Qu.: 4.20 1st Qu.:7.925 1st Qu.: 84.25
Median : 1.200 Median :22.10 Median :8.000 Median : 89.00
Mean : 3.497 Mean :22.20 Mean :8.050 Mean : 86.10
3rd Qu.: 2.875 3rd Qu.:28.57 3rd Qu.:8.100 3rd Qu.: 96.75
Max. :48.000 Max. :69.00 Max. :8.600 Max. :110.00
pho nit amm oxy
Min. :0.0100 Min. :0.150 Min. :0.0000 Min. : 4.100
1st Qu.:0.1250 1st Qu.:0.505 1st Qu.:0.0000 1st Qu.: 8.025
Median :0.2850 Median :1.600 Median :0.1000 Median :10.200
Mean :0.5577 Mean :1.654 Mean :0.2093 Mean : 9.390
3rd Qu.:0.5600 3rd Qu.:2.425 3rd Qu.:0.2000 3rd Qu.:10.900
Max. :4.2200 Max. :6.200 Max. :1.8000 Max. :12.400
bdo
Min. : 1.300
1st Qu.: 2.725
Median : 4.150
Mean : 5.117
3rd Qu.: 5.275
Max. :16.700
Lon Lat DFS Alt
Min. :5.083 Min. :46.71 Min. : 0.30 Min. :172.0
1st Qu.:6.142 1st Qu.:46.91 1st Qu.: 54.45 1st Qu.:248.0
Median :6.346 Median :47.19 Median :175.20 Median :395.0
Mean :6.359 Mean :47.13 Mean :188.23 Mean :481.6
3rd Qu.:6.784 3rd Qu.:47.33 3rd Qu.:301.73 3rd Qu.:782.0
Max. :7.168 Max. :47.48 Max. :453.00 Max. :934.0
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