collUtils: Auxiliary Package for Package 'CollapsABEL'

Provides some low level functions for processing PLINK input and output files.

Author
Kaiyin Zhong, Fan Liu
Date of publication
2016-03-31 19:15:26
Maintainer
Kaiyin Zhong <kindlychung@gmail.com>
License
GPL-3
Version
1.0.5
URLs

View on CRAN

Man pages

collUtils-package
A auxiliary package for CollapsABEL.
countlines
Count the number of lines in a file
getJArray
Import Java array into R
ncols
Counts the number of columns of whitespace delimited file.
rBed
Wrapper for constructor of Bed class
readcol
Read one column of a whitespace delimited text file
readcols
Read columns of a whitespace delimited text file
truncateEndOfFile
Truncate n bytes from end of file

Files in this package

collUtils
collUtils/inst
collUtils/inst/java
collUtils/inst/java/BedWorks.jar
collUtils/tests
collUtils/tests/testthat
collUtils/tests/testthat/test.bed
collUtils/tests/testthat/test.collutils.R
collUtils/tests/testthat/test.bim
collUtils/tests/testthat/test.fam
collUtils/src
collUtils/src/fileSize.cpp
collUtils/src/fileSize.h
collUtils/src/readcol.cpp
collUtils/src/readcol.h
collUtils/src/ncols.h
collUtils/src/countlines.h
collUtils/src/error_enum.h
collUtils/src/ncols.cpp
collUtils/src/readcols.cpp
collUtils/src/fileExists.h
collUtils/src/readcols.h
collUtils/src/fileExists.cpp
collUtils/src/countlines.cpp
collUtils/src/RcppExports.cpp
collUtils/NAMESPACE
collUtils/R
collUtils/R/readbed.R
collUtils/R/0_loadJava.R
collUtils/R/collUtils-internal.R
collUtils/R/RcppExports.R
collUtils/MD5
collUtils/java
collUtils/java/vu
collUtils/java/vu/co
collUtils/java/vu/co/kaiyin
collUtils/java/vu/co/kaiyin/ShiftCodes.java
collUtils/java/vu/co/kaiyin/Utils.java
collUtils/java/vu/co/kaiyin/GenoCodes.java
collUtils/java/vu/co/kaiyin/ByteArray.java
collUtils/java/vu/co/kaiyin/Bed.java
collUtils/java/vu/co/kaiyin/GenoBytes.java
collUtils/DESCRIPTION
collUtils/man
collUtils/man/rBed.Rd
collUtils/man/getJArray.Rd
collUtils/man/readcols.Rd
collUtils/man/ncols.Rd
collUtils/man/collUtils-package.Rd
collUtils/man/truncateEndOfFile.Rd
collUtils/man/readcol.Rd
collUtils/man/countlines.Rd