collUtils: Auxiliary Package for Package 'CollapsABEL'
Version 1.0.5

Provides some low level functions for processing PLINK input and output files.

AuthorKaiyin Zhong, Fan Liu
Date of publication2016-03-31 19:15:26
MaintainerKaiyin Zhong <kindlychung@gmail.com>
LicenseGPL-3
Version1.0.5
URL https://bitbucket.org/kindlychung/collutils
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("collUtils")

Getting started

Package overview

Popular man pages

collUtils-package: A auxiliary package for CollapsABEL.
countlines: Count the number of lines in a file
getJArray: Import Java array into R
ncols: Counts the number of columns of whitespace delimited file.
rBed: Wrapper for constructor of Bed class
readcols: Read columns of a whitespace delimited text file
truncateEndOfFile: Truncate n bytes from end of file
See all...

All man pages Function index File listing

Man pages

collUtils-package: A auxiliary package for CollapsABEL.
countlines: Count the number of lines in a file
getJArray: Import Java array into R
ncols: Counts the number of columns of whitespace delimited file.
rBed: Wrapper for constructor of Bed class
readcol: Read one column of a whitespace delimited text file
readcols: Read columns of a whitespace delimited text file
truncateEndOfFile: Truncate n bytes from end of file

Functions

Files

inst
inst/java
inst/java/BedWorks.jar
tests
tests/testthat
tests/testthat/test.bed
tests/testthat/test.collutils.R
tests/testthat/test.bim
tests/testthat/test.fam
src
src/fileSize.cpp
src/fileSize.h
src/readcol.cpp
src/readcol.h
src/ncols.h
src/countlines.h
src/error_enum.h
src/ncols.cpp
src/readcols.cpp
src/fileExists.h
src/readcols.h
src/fileExists.cpp
src/countlines.cpp
src/RcppExports.cpp
NAMESPACE
R
R/readbed.R
R/0_loadJava.R
R/collUtils-internal.R
R/RcppExports.R
MD5
java
java/vu
java/vu/co
java/vu/co/kaiyin
java/vu/co/kaiyin/ShiftCodes.java
java/vu/co/kaiyin/Utils.java
java/vu/co/kaiyin/GenoCodes.java
java/vu/co/kaiyin/ByteArray.java
java/vu/co/kaiyin/Bed.java
java/vu/co/kaiyin/GenoBytes.java
DESCRIPTION
man
man/rBed.Rd
man/getJArray.Rd
man/readcols.Rd
man/ncols.Rd
man/collUtils-package.Rd
man/truncateEndOfFile.Rd
man/readcol.Rd
man/countlines.Rd
collUtils documentation built on May 19, 2017, 8:45 p.m.

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