cometExactTest: Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm

An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.

Author
Max Leiserson [aut, cre], Hsin-Ta Wu [aut], Fabio Vandin [ctb], Vivian Hsiao [ctb], Benjamin Raphael [ctb]
Date of publication
2015-10-31 19:34:25
Maintainer
Max Leiserson <mdml@cs.brown.edu>
License
MIT + file LICENSE
Version
0.1.3
URLs

View on CRAN

Man pages

comet
CoMEt exact test for 2^k contingency tables

Files in this package

cometExactTest
cometExactTest/inst
cometExactTest/inst/CITATION
cometExactTest/src
cometExactTest/src/cometexacttest.c
cometExactTest/NAMESPACE
cometExactTest/R
cometExactTest/R/cometexacttest.R
cometExactTest/MD5
cometExactTest/DESCRIPTION
cometExactTest/man
cometExactTest/man/figures
cometExactTest/man/figures/tablex.pdf
cometExactTest/man/figures/tablex.png
cometExactTest/man/comet.Rd
cometExactTest/LICENSE