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The connector.sharepoint package provides a convenient interface for accessing and interacting with Microsoft SharePoint sites directly from R.
This vignette will guide you through the process of connecting to a SharePoint site, retrieving data, and performing various operations using this package.
To get started, you need to establish a connection to your SharePoint site. Use
the connector_sharepoint() function to authenticate and connect to your SharePoint site. Here's an example of how to do this:
library(connector.sharepoint) # Connect to SharePoint con <- connector_sharepoint(site_url = "sharepoint_url")
If you are using the connector package, you can connect to a SharePoint site
using the connect() function. This function based on a configuration file or
a list creates a connectors() object with a connectorfor each of the
specified datasources (for detailed explanation have a look at connector package).
Configuration file for connecting to SharePoint should look like this:
# An example of configuration file metadata: trial: "0001" extra_class: "adam_connector" url: !!expr Sys.getenv("SHAREPOINT_SITE_URL") datasources: - name: "adam" backend: type: "connector.sharepoint::connector_sharepoint" site_url: "{metadata.url}" folder: "{metadata.trial}/adam" extra_class: "{metadata.extra_class}" - name: "output" backend: type: "connector.sharepoint::connector_sharepoint" site_url: "{metadata.url}" folder: "{metadata.trial}/output"
Save this to _connector.yml file and use the connect() function to connect
to SharePoint:
library(connector) # Create connector object db <- connect()
Now you can access the SharePoint site using the db object and adam field
inside of it.
# Connection to SharePoint site. This will print object details db$adam
After the setup is done we can use this connection to manipulate Sharepoint data.
The connector packages provide a set of functions to read and write data from
the datasources. They all have similar interface, so it's easy to switch between
them.
Now, we will show how to read and write different types data from/to Sharepoint.
In these examples we will be using iris and mtcars datasets.
Here is an example of writing data to the ADaM table:
library(dplyr) # Manipulate data ## Iris data setosa <- iris |> filter(Species == "setosa") mean_for_all_iris <- iris |> group_by(Species) |> summarise_all(list(mean, median, sd, min, max)) ## mtcars data cars <- mtcars |> filter(mpg > 22) mean_for_all_mtcars <- mtcars |> group_by(gear) |> summarise( across( everything(), list("mean" = mean, "median" = median, "sd" = sd, "min" = min, "max" = max), .names = "{.col}_{.fn}" ) ) |> tidyr::pivot_longer( cols = -gear, names_to = c(".value", "stat"), names_sep = "_" ) ## Store data db$adam |> write_cnt(x = setosa, name = "setosa.csv", overwrite = TRUE) db$adam |> write_cnt(mean_for_all_iris, "mean_iris.csv", overwrite = TRUE) db$adam |> write_cnt(cars, "cars_mpg.csv", overwrite = TRUE) db$adam |> write_cnt(mean_for_all_mtcars, "mean_mtcars.csv", overwrite = TRUE)
Now, let's read the data back manipulate it a bit and write it to the SharePoint. This way we can save different types of data in different formats.
library(gt) library(tidyr) library(ggplot2) # List and load data db$adam |> list_content_cnt() table <- db$adam |> read_cnt("mean_mtcars.csv") gttable <- table |> gt(groupname_col = "gear") # Save nontabular data to sharepoint tmp_file <- tempfile(fileext = ".docx") gtsave(gttable, tmp_file) db$output |> upload_cnt(tmp_file, "tmeanallmtcars.docx") # Manipulate data setosa_fsetosa <- db$adam |> read_cnt("setosa.csv") |> filter(Sepal.Length > 5) fsetosa <- ggplot(setosa) + aes(x = Sepal.Length, y = Sepal.Width) + geom_point() ## Store data into output location db$output |> write_cnt(fsetosa$data, "fsetosa.csv") db$output |> write_cnt(fsetosa, "fsetosa.rds") tmp_file <- tempfile(fileext = ".png") ggsave(tmp_file, fsetosa) db$output |> upload_cnt(tmp_file, "fsetosa.png")
In this vignette we showed how to connect to SharePoint site, read and write data from it. We also showed how to use the connector package to connect to SharePoint and how to manipulate data using the connector package.
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