readseq: readseq

Description Usage Arguments Value Examples

Description

Reading a sequence file in fasta format

Usage

1
readseq(dataFile="", dataType="protein", debug=FALSE)

Arguments

dataFile

character, a FASTA data file name with full path.

dataType

character, 'protein' by default, the type of data will be processed. It could be 'DNA', 'RNA', 'protein', 'SNP' or 'other'.

debug

logic, FALSE by default, to indicate whether the debug message will be displayed or not.

Value

list,contains the original data matrix and some other information.

Examples

1
data = readseq(dataFile=getexample(dataType="protein"), dataType="protein")

cooccurNet documentation built on May 2, 2019, 5:51 a.m.