copy_assemble: copy_assemble

In copyseparator: Assembling Long Gene Copies from Short Read Data

copy_assemble

Description

Assembles a small number of overlapping DNA sequences into their respective gene copies.

Usage

copy_assemble(filename, copy_number, verbose = 1)

Arguments

filename	A fasta alignment of a small number of overlapping DNA sequences (results from "copy_separate") covering the entire length of the target gene. Check the alignment carefully before proceeding.
copy_number	An integer (e.g. 2,3, or 4) giving the anticipated number of gene copies. Must be the same value as used for "copy_separate".
verbose	Turn on (verbose=1; default) or turn off (verbose=0) the output.

Value

A fasta alignment of the anticipated number of full-length gene copies.

Examples

## Not run: 
copy_assemble("inst/extdata/combined_con.fasta",2,1)

## End(Not run)

copyseparator documentation built on Nov. 25, 2022, 1:06 a.m.