View source: R/copy_assemble.R
copy_assemble | R Documentation |
Assembles a small number of overlapping DNA sequences into their respective gene copies.
copy_assemble(filename, copy_number, verbose = 1)
filename |
A fasta alignment of a small number of overlapping DNA sequences (results from "copy_separate") covering the entire length of the target gene. Check the alignment carefully before proceeding. |
copy_number |
An integer (e.g. 2,3, or 4) giving the anticipated number of gene copies. Must be the same value as used for "copy_separate". |
verbose |
Turn on (verbose=1; default) or turn off (verbose=0) the output. |
A fasta alignment of the anticipated number of full-length gene copies.
## Not run: copy_assemble("inst/extdata/combined_con.fasta",2,1) ## End(Not run)
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