coreheat: Draw Correlation Heatmaps
In coreheat: Correlation Heatmaps
Description
Create correlation heatmaps from a numeric matrix. Ensembl Gene ID row names can be converted to Gene Symbols
using, e.g., BioMart. Optionally, data can be clustered and filtered by correlation, tree cutting and/or number
of missing values. Genes of interest can be highlighted in the plot and correlation significance be indicated by
asterisks encoding corresponding P-Values. Plot dimensions and label measures are adjusted automatically by default.
The plot features rely on the heatmap.n2() function in the 'heatmapFlex' package.
Details
Package: coreheat
Type: Package
Initial version: 0.1.0
Created: 2016-08-11
License: GPL-3
The main function to be called by end users is cormap2 which is wrapper performing all necessary steps to create a heatmap.
Author(s)
Vidal Fey <vidal.fey@gmail.com>, Henri Sara <henri.sara@gmail.com>
Maintainer: Vidal Fey <vidal.fey@gmail.com>
coreheat documentation built on Sept. 19, 2021, 9:07 a.m.
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Description
Create correlation heatmaps from a numeric matrix. Ensembl Gene ID row names can be converted to Gene Symbols using, e.g., BioMart. Optionally, data can be clustered and filtered by correlation, tree cutting and/or number of missing values. Genes of interest can be highlighted in the plot and correlation significance be indicated by asterisks encoding corresponding P-Values. Plot dimensions and label measures are adjusted automatically by default. The plot features rely on the heatmap.n2() function in the 'heatmapFlex' package.
Details
| Package: | coreheat |
| Type: | Package |
| Initial version: | 0.1.0 |
| Created: | 2016-08-11 |
| License: | GPL-3 |
The main function to be called by end users is cormap2 which is wrapper performing all necessary steps to create a heatmap.
|
Author(s)
Vidal Fey <vidal.fey@gmail.com>, Henri Sara <henri.sara@gmail.com> Maintainer: Vidal Fey <vidal.fey@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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