corr.Qmatrix: Corr.Qmatrix

In corrsieve: Software for Summarising and Evaluating STRUCTURE Output

Corr.Qmatrix

Description

Calculates Q matrix correlations from structure files in the folder specified in the filepath option

Usage

corr.Qmatrix(filepath = "./", instruct = FALSE, rowncol = TRUE, 
		    avmax = TRUE, pvalue = FALSE, raw = TRUE, r = 0.99, p = 0.05)

Arguments

filepath	a character string listing the folder's path from the current directory
instruct	when TRUE, data is in INSTRUCT format, else data is in STRUCTURE format
rowncol	when TRUE, calculates and returns filtered Q matrix correlations using the rows-and-columns criterion
avmax	when TRUE, calculates and returns filtered Q matrix correlations using the average maximum correlation criterion
pvalue	when TRUE, calculates and returns Q matrix correlations using permutation tests
raw	when TRUE, returns the raw unfiltered Q matrix correlations
r	the minimum r value to classify a correlation as significant
p	the maximum p value to classify a correlation as significant. Ignored unless pvalue = TRUE

Value

Returns a S4 object of class QmatrixFilt listing Q matrix correlation results for all STRUCTURE results files in the designated folder

Author(s)

Michael G. Campana <[e-mail]>

corrsieve documentation built on May 3, 2022, 1:06 a.m.