countfitteR package - an overview

In countfitteR: Comprehensive Automatized Evaluation of Distribution Models for Count Data

Introduction

countfitteR is a R package and shiny app designed to perform analysis of count data. This vignette covers important features and data sets of the app. We extended our automatized imaging platform [@rodiger_highly_2013, @willitzki_new_2012] for a multiparametric analysis of cell damage (DNA double strand breaks) [@reddig_dna_2018, @rodiger_quantification_2018]. Digital image analysis of the DSB biomarkers gamma H2AX was used to describe the alteration of the cell phenotype.

Data sets

# Load countfitteR package
library(countfitteR)

# Assign the csv file to filename
data("case_study")

processed_counts <- process_counts(case_study)

fit_counts(processed_counts, model = "all")

References

countfitteR documentation built on Oct. 23, 2020, 5:11 p.m.