cp4p: Calibration Plot for Proteomics
Version 0.3.5

Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.

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AuthorQuentin Giai Gianetto, Florence Combes, Claire Ramus, Christophe Bruley, Yohann Couté, Thomas Burger
Date of publication2016-05-16 16:21:27
MaintainerQuentin Giai Gianetto <quentin2g@yahoo.fr>
LicenseGPL-3
Version0.3.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("cp4p")

Man pages

adjust.p: Adjusted p-values for adaptive FDR control
calibration.plot: Displaying the "Calibration Plot" of a vector of p-values.
cp4p-package: Introduction to the CP4P package
estim.pi0: Estimation of the proportion of true null hypotheses
LFQRatio2: Dataset "LFQRatio2"
LFQRatio25: Dataset "LFQRatio25"

Functions

LFQRatio2 Man page
LFQRatio25 Man page
adjust.p Man page Source code
calibration.plot Man page Source code
cp4p Man page
cp4p-package Man page
estim.pi0 Man page Source code

Files

inst
inst/tutorial-cp4p.pdf
NAMESPACE
data
data/LFQRatio2.rda
data/datalist
data/datalist/LFQRatio2.rda
data/datalist/LFQRatio25.rda
data/LFQRatio25.rda
R
R/estim_pi0.R
R/calibration_plot.R
R/adjust_p.R
MD5
DESCRIPTION
man
man/LFQRatio25.Rd
man/cp4p-package.Rd
man/estim.pi0.Rd
man/calibration.plot.Rd
man/adjust.p.Rd
man/LFQRatio2.Rd
cp4p documentation built on May 20, 2017, 5:51 a.m.