cp4p: Calibration Plot for Proteomics

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Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.

Author
Quentin Giai Gianetto, Florence Combes, Claire Ramus, Christophe Bruley, Yohann Couté, Thomas Burger
Date of publication
2016-05-16 16:21:27
Maintainer
Quentin Giai Gianetto <quentin2g@yahoo.fr>
License
GPL-3
Version
0.3.5

View on CRAN

Man pages

adjust.p
Adjusted p-values for adaptive FDR control
calibration.plot
Displaying the "Calibration Plot" of a vector of p-values.
cp4p-package
Introduction to the CP4P package
estim.pi0
Estimation of the proportion of true null hypotheses
LFQRatio2
Dataset "LFQRatio2"
LFQRatio25
Dataset "LFQRatio25"

Files in this package

cp4p
cp4p/inst
cp4p/inst/tutorial-cp4p.pdf
cp4p/NAMESPACE
cp4p/data
cp4p/data/LFQRatio2.rda
cp4p/data/datalist
cp4p/data/datalist/LFQRatio2.rda
cp4p/data/datalist/LFQRatio25.rda
cp4p/data/LFQRatio25.rda
cp4p/R
cp4p/R/estim_pi0.R
cp4p/R/calibration_plot.R
cp4p/R/adjust_p.R
cp4p/MD5
cp4p/DESCRIPTION
cp4p/man
cp4p/man/LFQRatio25.Rd
cp4p/man/cp4p-package.Rd
cp4p/man/estim.pi0.Rd
cp4p/man/calibration.plot.Rd
cp4p/man/adjust.p.Rd
cp4p/man/LFQRatio2.Rd