API for ctsmTMB
Continuous Time Stochastic Modelling using Template Model Builder
| Global functions | |
|---|---|
| Ornstein | Man page |
| apply_algebraics_and_define_trans_equations | Source code |
| apply_algebraics_and_lamperti | Source code |
| apply_lamperti | Source code |
| basic_data_check | Source code |
| basic_model_check | Source code |
| build_model | Source code |
| calculate_complex_observation_lefthandsides | Source code |
| calculate_diff_terms | Source code |
| calculate_fit_statistics_ekf | Source code |
| calculate_fit_statistics_laplace | Source code |
| calculate_fit_statistics_laplace2 | Source code |
| calculate_fit_statistics_lkf | Source code |
| calculate_fit_statistics_ukf | Source code |
| capitalize_first | Source code |
| check_algebraics | Source code |
| check_and_set_data | Source code |
| check_for_ADfun_rebuild | Source code |
| check_for_bad_algebraics | Source code |
| check_for_data_rebuild | Source code |
| check_if_name_is_overwritable | Source code |
| check_initial_state | Source code |
| check_inputs | Source code |
| check_observation_eqs | Source code |
| check_observation_variance_eqs | Source code |
| check_parameter_matrix | Source code |
| check_parameter_vector | Source code |
| check_system_eqs | Source code |
| compile_cppfile | Source code |
| compile_rcpp_functions | Source code |
| construct_makeADFun | Source code |
| create.function.from.string.body | Source code |
| create.rcpp.state.space.function.strings | Source code |
| create.state.space.function.strings | Source code |
| create.state.space.functions.for.estimation | Source code |
| create.state.space.functions.for.filtering | Source code |
| create_ekf_predict_return | Source code |
| create_ekf_simulation_return | Source code |
| create_estimation_return_fit | Source code |
| create_filter_results | Source code |
| create_return_prediction | Source code |
| create_return_simulation | Source code |
| create_smooth_results | Source code |
| create_state_space_function_strings | Source code |
| ctsmTMB | Man page |
| ctsmTMB.Deriv | Source code |
| ekf_filter_cpp | Source code |
| ekf_filter_r | Source code |
| ekf_filter_rcpp | Source code |
| ekf_r_prediction | Source code |
| ekf_r_simulation | Source code |
| ekf_rcpp_prediction | Source code |
| ekf_rcpp_simulation | Source code |
| erf | Source code |
| execute_ekf_prediction2 | Source code |
| execute_ekf_simulation2 | Source code |
| final_build_check | Source code |
| getAdjoints | Source code |
| getInitialStateEstimator | Source code |
| getKalmanFunctions | Source code |
| getLossFunction | Source code |
| getOdeSolvers | Source code |
| getSimulationFunctions | Source code |
| getSystemDimensions | Source code |
| getUkfKalmanFunctions | Source code |
| getUkfOdeSolvers | Source code |
| getUkfSigmaWeights | Source code |
| get_Deriv_drules | Source code |
| get_Deriv_environment | Source code |
| get_substitution_list | Source code |
| getggplot2theme | Source code |
| hat2pow | Source code |
| invlogit | Source code |
| invlogit2 | Source code |
| laplace_smooth | Source code |
| lkf_filter_r | Source code |
| logit | Source code |
| makeADFun_ekf_rtmb | Source code |
| makeADFun_ekf_tmb | Source code |
| makeADFun_laplace2_rtmb | Source code |
| makeADFun_laplace_rtmb | Source code |
| makeADFun_lkf_rtmb | Source code |
| makeADFun_lkf_tmb | Source code |
| makeADFun_ukf_rtmb | Source code |
| makeADFun_ukf_tmb | Source code |
| perform_estimation | Source code |
| perform_filtering | Source code |
| perform_prediction | Source code |
| perform_simulation | Source code |
| perform_smoothing | Source code |
| plot.ctsmTMB.fit | Man page Source code |
| plot.ctsmTMB.pred | Man page Source code |
| plot.ctsmTMB.profile | Man page Source code |
| print.ctsmTMB | Man page Source code |
| print.ctsmTMB.fit | Man page Source code |
| profile.ctsmTMB.fit | Man page Source code |
| remove_parameter | Source code |
| save_settings_for_check | Source code |
| set_data_for_laplace_method | Source code |
| set_flags | Source code |
| set_k_ahead | Source code |
| set_ode_timestep | Source code |
| set_parameters | Source code |
| set_simulation_timestep | Source code |
| summary.ctsmTMB.fit | Man page Source code |
| try_withWarningRecovery | Source code |
| ukf_filter_r | Source code |
| write_cppfile | Source code Source code |
| write_ekf_cppfile | Source code |
| write_f | Source code |
| write_g | Source code |
| write_h | Source code |
| write_h_var | Source code |
| write_jac_f | Source code |
| write_jac_f_wrt_u | Source code |
| write_jac_h | Source code |
| write_lkf_cppfile | Source code |
| write_ukf_cppfile | Source code |
| ziggsetseed | Source code |
