cumSeg: Change point detection in genomic sequences

Estimation of number and location of change points in mean-shift (piecewise constant) models. Particularly useful to model genomic sequences of continuous measurements.

Author
Vito M.R. Muggeo
Date of publication
2012-10-29 08:58:30
Maintainer
Vito M.R. Muggeo <vito.muggeo@unipa.it>
License
GPL
Version
1.1

View on CRAN

Man pages

cumSeg-package
Change point detection and estimation in genomic sequences
fibroblast
Fibroblast Cell Line dataset
fit.control
Auxiliary function for controlling model fitting
jumpoints
Change point estimation in piecewise constant models
plot.aCGHsegmented
Plot method for the class 'aCGHsegmented'
sel.control
Auxiliary function for controlling model selection

Files in this package

cumSeg
cumSeg/data
cumSeg/data/fibroblast.rda
cumSeg/NAMESPACE
cumSeg/man
cumSeg/man/fit.control.Rd
cumSeg/man/plot.aCGHsegmented.Rd
cumSeg/man/fibroblast.Rd
cumSeg/man/cumSeg-package.Rd
cumSeg/man/jumpoints.Rd
cumSeg/man/sel.control.Rd
cumSeg/DESCRIPTION
cumSeg/MD5
cumSeg/R
cumSeg/R/sel.control.R
cumSeg/R/plot.aCGHsegmented.R
cumSeg/R/jumpoints.R
cumSeg/R/fit.control.R