inst/doc/Creating_a_confusion_matrix.R

In cvms: Cross-Validation for Model Selection

## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/vignette_conf_mat-",
  dpi = 92,
  fig.retina = 2
)
options(rmarkdown.html_vignette.check_title = FALSE)

## ----warning=FALSE, message=FALSE---------------------------------------------
library(cvms)
library(tibble)   # tibble()

set.seed(1)

## -----------------------------------------------------------------------------
d_binomial <- tibble("target" = rbinom(100, 1, 0.7),
                     "prediction" = rbinom(100, 1, 0.6))

d_binomial

## -----------------------------------------------------------------------------
basic_table <- table(d_binomial)
basic_table

## -----------------------------------------------------------------------------
cfm <- as_tibble(basic_table)
cfm

## -----------------------------------------------------------------------------
plot_confusion_matrix(cfm, 
                      target_col = "target", 
                      prediction_col = "prediction",
                      counts_col = "n")

## -----------------------------------------------------------------------------
eval <- evaluate(d_binomial,
                 target_col = "target",
                 prediction_cols = "prediction",
                 type = "binomial")

eval

## -----------------------------------------------------------------------------
conf_mat <- eval$`Confusion Matrix`[[1]]
conf_mat

## -----------------------------------------------------------------------------
plot_confusion_matrix(conf_mat)

## -----------------------------------------------------------------------------
d_multi <- tibble("target" = floor(runif(100) * 3),
                  "prediction" = floor(runif(100) * 3))

d_multi

## -----------------------------------------------------------------------------
conf_mat <- confusion_matrix(targets = d_multi$target,
                             predictions = d_multi$prediction)

conf_mat

## -----------------------------------------------------------------------------
plot_confusion_matrix(conf_mat$`Confusion Matrix`[[1]])

## -----------------------------------------------------------------------------
plot_confusion_matrix(conf_mat$`Confusion Matrix`[[1]],
                      add_sums = TRUE)

## -----------------------------------------------------------------------------
plot_confusion_matrix(conf_mat$`Confusion Matrix`[[1]], 
                      place_x_axis_above = FALSE)

## -----------------------------------------------------------------------------
plot_confusion_matrix(conf_mat$`Confusion Matrix`[[1]], 
                      add_normalized = FALSE)

## -----------------------------------------------------------------------------
plot_confusion_matrix(conf_mat$`Confusion Matrix`[[1]],
                      palette = "Oranges")

plot_confusion_matrix(conf_mat$`Confusion Matrix`[[1]],
                      palette = "Greens")

## -----------------------------------------------------------------------------
plot_confusion_matrix(
  conf_mat$`Confusion Matrix`[[1]],
  add_sums = TRUE,
  sums_settings = sum_tile_settings(
    palette = "Oranges",
    label = "Total",
    tc_tile_border_color = "black"
  )
)

## -----------------------------------------------------------------------------
plot_confusion_matrix(
  conf_mat$`Confusion Matrix`[[1]],
  font_counts = font(
    size = 10,
    angle = 45,
    color = "red"
  ),
  add_normalized = FALSE,
  add_col_percentages = FALSE,
  add_row_percentages = FALSE
)