patristic_matrix_array_phylo_congruify: Congruify a patristic matrix array from a given 'phylo'...
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patristic_matrix_array_phylo_congruify

R Documentation

Congruify a patristic matrix array from a given `phylo` object.

Congruify a patristic matrix array from a given phylo object.

patristic_matrix_array_phylo_congruify(
  patristic_matrix,
  target_tree,
  dating_method = "PATHd8",
  attempt_fix = TRUE
)

`patristic_matrix`	A patristic matrix, `rownames` and `colnames` must be taxa.
`target_tree`	A `phylo` object. Use this in case you want a specific backbone for the output tree.
`dating_method`	The method used for tree dating.
`attempt_fix`	Default to `TRUE`. If congruification results in NA branch lengths, it will attempt to fix them.