phylo_subset_both: Subset a reference and a target tree given as 'phylo'...

In datelife: Scientific Data on Time of Lineage Divergence for Your Taxa

Subset a reference and a target tree given as phylo objects.

Description

Subset a reference and a target tree given as phylo objects.

Usage

phylo_subset_both(
  reference_tree,
  taxa,
  phy = NULL,
  phy4 = NULL,
  dating_method = "PATHd8"
)

Arguments

reference_tree	A phylo object.
taxa	Vector of taxon names to get a subset for.
phy	A user tree to congruify as phylo object (ape).
phy4	A user tree to congruify in phylo4 format (phylobase).
dating_method	The method used for tree dating.

Value

A list with a patristic matrix array and a ⁠$problem⁠ if any.

datelife documentation built on July 10, 2023, 2:02 a.m.