dbGaP Phenotype Check Report
In dbGaPCheckup: dbGaP Checkup

require(knitr)
# Set so that long lines in R will be wrapped:
opts_chunk$set(tidy.opts=list(width.cutoff=80),tidy=TRUE)

Load Libraries

library(pander)
library(ggplot2)
library(formatR)

Read parameters

DS.data <- params$DS.data
DD.dict <- params$DD.dict
start <- params$start
end <- params$end
sex.split <- params$sex.split
sex.name <- params$sex.name
dataset.na <- params$dataset.na

Summary and plots

panderOptions('knitr.auto.asis', FALSE)
dat_function_selected(DS.data, DD.dict, sex.split = sex.split, sex.name = sex.name, start = start, end = end, dataset.na = dataset.na)