API for deepSTRAPP
Test for Differences in Diversification Rates over Time
| Global functions | |
|---|---|
| BAMM_template_diversification | Man page |
| BSM_to_phytools_simmap | Man page Source code |
| BSMs_to_phytools_simmaps | Man page Source code |
| Ponerinae_binary_range_table | Man page |
| Ponerinae_biogeo_data_old_calib | Man page |
| Ponerinae_cat_2lvl_data_old_calib | Man page |
| Ponerinae_cat_3lvl_data_old_calib | Man page |
| Ponerinae_trait_cont_tip_data_10My | Man page |
| Ponerinae_trait_tip_data | Man page |
| Ponerinae_tree | Man page |
| Ponerinae_tree_old_calib | Man page |
| annotate_npc | Source code Source code |
| compute_STRAPP_test_for_focal_time | Man page |
| cut_contMap_for_focal_time | Man page Source code |
| cut_densityMap_for_focal_time | Man page Source code |
| cut_densityMaps_for_focal_time | Man page Source code |
| cut_phylo_for_focal_time | Man page Source code |
| eel_biogeo_data | Man page |
| eel_cat_3lvl_data | Man page |
| extract_diversification_data_melted_df_for_focal_time | Man page |
| extract_most_likely_ranges_from_densityMaps_for_focal_time | Man page |
| extract_most_likely_states_from_densityMaps_for_focal_time | Man page |
| extract_most_likely_trait_values_for_focal_time | Man page |
| extract_most_likely_trait_values_from_contMap_for_focal_time | Man page |
| is_color | Source code |
| is_dev_version | Man page |
| mammals | Man page |
| mean_angle | Source code |
| plot_BAMM_rates | Man page |
| plot_STRAPP_pvalues_over_time | Man page |
| plot_contMap | Man page |
| plot_densityMaps_overlay | Man page |
| plot_histogram_STRAPP_test_for_focal_time | Man page |
| plot_histograms_STRAPP_tests_over_time | Man page |
| plot_rates_through_time | Man page |
| plot_rates_vs_trait_data_for_focal_time | Man page |
| plot_rates_vs_trait_data_over_time | Man page |
| plot_traits_vs_rates_on_phylogeny_for_focal_time | Man page |
| plot_traits_vs_rates_on_phylogeny_over_time | Man page |
| prepare_diversification_data | Man page |
| prepare_trait_data | Man page |
| run_deepSTRAPP_for_focal_time | Man page |
| run_deepSTRAPP_over_time | Man page |
| select_best_model_from_BioGeoBEARS | Man page |
| select_best_trait_model_from_geiger | Man page |
| update_maps_for_focal_time | Source code |
| update_rates_and_regimes_for_focal_time | Man page |
| whale_BAMM_object | Man page |
