scale_geo: Geological Time Scale color scales

In deeptime: Plotting Tools for Anyone Working in Deep Time

Geological Time Scale color scales

Description

Color scales using the colors in the Geological Time Scale graphics.

Usage

scale_color_geo(dat, ...)

scale_fill_geo(dat, ...)

scale_discrete_geo(dat, aesthetics, ...)

Arguments

dat	Either A) a string indicating a built-in dataframe with interval data from the ICS ("periods", "epochs", "stages", "eons", or "eras"), B) a string indicating a timescale from macrostrat (see list here: https://macrostrat.org/api/defs/timescales?all), or C) a custom data.frame of time interval boundaries (see coord_geo()).
...	Arguments passed on to ggplot2::discrete_scale scale_name The name of the scale that should be used for error messages associated with this scale. name The name of the scale. Used as the axis or legend title. If waiver(), the default, the name of the scale is taken from the first mapping used for that aesthetic. If NULL, the legend title will be omitted. labels One of: NULL for no labels waiver() for the default labels computed by the transformation object A character vector giving labels (must be same length as breaks) An expression vector (must be the same length as breaks). See ?plotmath for details. A function that takes the breaks as input and returns labels as output. Also accepts rlang lambda function notation. limits One of: NULL to use the default scale values A character vector that defines possible values of the scale and their order A function that accepts the existing (automatic) values and returns new ones. Also accepts rlang lambda function notation. na.translate Unlike continuous scales, discrete scales can easily show missing values, and do so by default. If you want to remove missing values from a discrete scale, specify na.translate = FALSE. na.value If na.translate = TRUE, what aesthetic value should the missing values be displayed as? Does not apply to position scales where NA is always placed at the far right. drop Should unused factor levels be omitted from the scale? The default, TRUE, uses the levels that appear in the data; FALSE includes the levels in the factor. Please note that to display every level in a legend, the layer should use show.legend = TRUE. guide A function used to create a guide or its name. See guides() for more information. call The call used to construct the scale for reporting messages. super The super class to use for the constructed scale
aesthetics	Character string or vector of character strings listing the name(s) of the aesthetic(s) that this scale works with. This can be useful, for example, to apply colour settings to the colour and fill aesthetics at the same time, via aesthetics = c("colour", "fill").

Examples

library(ggplot2)
df <- data.frame(
  x = runif(1000, 0, 10), y = runif(1000, 0, 10),
  color = sample(periods$name, 1000, TRUE), shape = 21
)
ggplot(df) +
  geom_point(aes(x = x, y = y, fill = color), shape = 21) +
  scale_fill_geo("periods", name = "Period") +
  theme_classic()

# cut continuous variable into discrete
df <- data.frame(x = runif(1000, 0, 1000), y = runif(1000, 0, 8))
df$color <- cut(df$x, c(periods$min_age, periods$max_age[22]), periods$name)
ggplot(df) +
  geom_point(aes(x = x, y = y, color = color)) +
  scale_x_reverse() +
  scale_color_geo("periods", name = "Period") +
  coord_geo(xlim = c(1000, 0), ylim = c(0, 8)) +
  theme_classic()

deeptime documentation built on Oct. 30, 2024, 9:08 a.m.