dendroextras: Extra functions to cut, label and colour dendrogram clusters

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This package provides extra functions to manipulate dendrograms that build on the base functions provided by the stats package. The main functionality it is designed to add is the ability to colour all the edges in an object of class dendrogram according to cluster membership i.e. each subtree is coloured, not just the terminal leaves. In addition it provides some utility functions to cut dendrogram and hclust objects and to set/get labels.

Author
Gregory Jefferis
Date of publication
2014-08-05 00:24:21
Maintainer
Gregory Jefferis <jefferis@gmail.com>
License
GPL (>= 2)
Version
0.2.1

View on CRAN

Man pages

colour_clusters
Colour sub-clusters of a tree (dendrogram/hclust) object
dendroextras-package
Extra functions to cut, label and colour dendrogram clusters
labels-assign
Set the labels of an object
labels.hclust
Find labels of hclust object (in dendrogram order)
leaf_colours
Return the leaf colours of a dendrogram
set_leaf_colours
Set the leaf colours of a dendrogram
slice
Cut a tree-like object into groups numbered in tree order

Files in this package

dendroextras
dendroextras/inst
dendroextras/inst/tests
dendroextras/inst/tests/test-labels.R
dendroextras/inst/tests/test-slice.R
dendroextras/inst/tests/test-colour-clusters.R
dendroextras/tests
dendroextras/tests/test-all.R
dendroextras/NAMESPACE
dendroextras/NEWS
dendroextras/R
dendroextras/R/dendroextras-package.R
dendroextras/R/slice.R
dendroextras/R/labels.R
dendroextras/R/colour_clusters.R
dendroextras/README.md
dendroextras/MD5
dendroextras/DESCRIPTION
dendroextras/man
dendroextras/man/labels.hclust.Rd
dendroextras/man/labels-assign.Rd
dendroextras/man/dendroextras-package.Rd
dendroextras/man/colour_clusters.Rd
dendroextras/man/slice.Rd
dendroextras/man/leaf_colours.Rd
dendroextras/man/set_leaf_colours.Rd