denpro: Visualization of Multivariate Functions, Sets, and Data

We provide tools to (1) visualize multivariate density functions and density estimates with level set trees, (2) visualize level sets with shape trees, (3) visualize multivariate data with tail trees, (4) visualize scales of multivariate density estimates with mode graphs and branching maps, and (5) visualize anisotropic spread with 2D volume functions and 2D probability content functions. Level set trees visualize mode structure, shape trees visualize shapes of level sets of unimodal densities, and tail trees visualize connected data sets. The kernel estimator is implemented but the package may also be applied for visualizing other density estimates.

AuthorJussi Klemela <jussi.klemela@gmail.com>
Date of publication2015-05-22 19:38:40
MaintainerJussi Klemela <jussi.klemela@gmail.com>
LicenseGPL (>= 2)
Version0.9.2
http://jussiklemela.com/denpro/

View on CRAN

Man pages

branchmap: Computes a branching map from a sequence of level set trees

colors2data: Assigns colors to data points

denpro-package: Visualization of Multivariate Functions, Sets, and Data

draw.levset: Plots a level set of a 2D function

draw.pcf: Prepares the plotting of a 2D or 1D piecewise constant...

excmas: Computes the excess masses associated with the nodes of a...

exmap: Computes a scale of excess mass profiles

findbnodes: Finds pointers to the nodes of a level set tree

hgrid: Returns a grid of smoothing parameter values

leafsfirst: Computes a level set tree, shape tree, or tail tree

leafsfirst.adagrid: Computes a level set tree of a discretized kernel estimator...

locofmax: Calculates the location of the maximum of a function

lstseq.kern: Calculates a scale of kernel estimates

modecent: Returns locations of modes of a density estimate

modegraph: Calculates a mode graph from a scale of estimates

paracoor: Makes a parallel coordinate plot

pcf.func: Calculates a piecewise constant function for some...

pcf.kern: Computes a multivariate kernel estimate

plotbary: Makes a barycenter plot of a level set tree, a location plot...

plotbranchmap: Plots a branching map

plotexmap: Plots a scale of excess mass profiles

plotmodet: Plots a mode graph

plottree: Makes a tree plot of a level set tree, of a shape tree, or of...

plotvolu: Makes a volume plot of a level set tree, a shape plot of a...

plotvolu2d: Makes a perspective plot of a 2D volume function or a 2D...

profgene: Calculates the level set tree of a rectangularwise constant...

profhist: Calculates the level set tree of a histogram

profkern: Calculates a level set tree of a kernel estimate

prunemodes: Prunes modes away from a level set tree or a shape tree

scaletable: Implements the scale and shape table

shape2d: Returns a 2D volume function or 2D probability content...

sim.data: Generates data for illustrative purposes

slicing: Returns a one- or two-dimensional slice of a multivariate...

stseq: Calculates a sequence of radius functions from a sequence of...

treedisc: Prunes a level set tree or a tail tree

tree.segme: Returns the segmentation of the nodes of a visualization tree

undocumented: Undocumented functions

Files in this package

denpro
denpro/src
denpro/src/kerprof.c
denpro/src/proftree.c
denpro/src/kereva.c
denpro/src/kernsta.c
denpro/NAMESPACE
denpro/R
denpro/R/digit.R denpro/R/eval.func.1D.R denpro/R/sim.mulmodII.R denpro/R/onko.R denpro/R/posipart.R denpro/R/rota.seq.R denpro/R/dend2parent.R denpro/R/declevgen.R denpro/R/plot.kernscale.R denpro/R/shapetree.R denpro/R/plotvolu.new.R denpro/R/shape2d.R denpro/R/sim.fssk.R denpro/R/findbnodes.R denpro/R/massat.R denpro/R/profkern.R denpro/R/draw.levset.R denpro/R/touch.R denpro/R/plotbary.slide.R denpro/R/lstseq.kern.R denpro/R/dendat2lst.R denpro/R/eva.copula.R denpro/R/plotprof.R denpro/R/plot.histdata.R denpro/R/plottext.R denpro/R/explo.compa.R denpro/R/nn.radit.R denpro/R/coloallo.R denpro/R/touchi.R denpro/R/touchi.dela.R denpro/R/draw.pcf.R denpro/R/leafsfirst.tail.R denpro/R/histo1d.R denpro/R/plot.complex.R denpro/R/simmix.R denpro/R/modetestgauss.R denpro/R/colobary.roots.R denpro/R/histo2data.R denpro/R/kergrid.R denpro/R/findbranch.pare.R denpro/R/touchstep.R denpro/R/profkernCRC.R denpro/R/pcf.kern.vech.R denpro/R/eva.lognormal.R denpro/R/fs.calc.R denpro/R/joincongen.R denpro/R/plotvolu2d.R denpro/R/volsimplex.R denpro/R/pcf.func.R denpro/R/blokitus2.R denpro/R/boundbox.R denpro/R/dotouchgen.R denpro/R/evanor.R denpro/R/den2reg.R denpro/R/fs.calc.parti.R denpro/R/preprocess.R denpro/R/modecent.R denpro/R/dist.func.R denpro/R/allokoi.R denpro/R/til.R denpro/R/findneighbor.R denpro/R/voltriangle.R denpro/R/makehis.R denpro/R/sphere.map.R denpro/R/plottree.R denpro/R/nnt.R denpro/R/tree.segme.R denpro/R/multitree.R denpro/R/findleafs.R denpro/R/eva.prod.R denpro/R/profgene.R denpro/R/leafsfirst.new.R denpro/R/plotmodet.R denpro/R/leafsfirst.shape.R denpro/R/leafsfirst.R denpro/R/colorsofdata.R denpro/R/moodilkm.R denpro/R/cvolumdya.R denpro/R/lst2xy.R denpro/R/sim.data.R denpro/R/ccente.R denpro/R/pcf.matrix.R denpro/R/depth.R denpro/R/eva.plackett.R denpro/R/siborder.new.R denpro/R/findend.R denpro/R/qq.plot.R denpro/R/colorsofdata.adagrid.new.R denpro/R/profkernC.R denpro/R/pcf.kernC.R denpro/R/hgrid.R denpro/R/paraclus.R denpro/R/montecarlo.ball.R denpro/R/proftreeR.R denpro/R/leafsfirst.nn.R denpro/R/treedisc.ada.R denpro/R/montecarlo.complex.R denpro/R/epane.R denpro/R/profkernR.R denpro/R/omamax.R denpro/R/nn.indit.R denpro/R/kereva.R denpro/R/simukern.R denpro/R/colorsofdata.tail.R denpro/R/leafsfirst.intpol.R denpro/R/listchange.R denpro/R/weightsit.R denpro/R/cvolum.R denpro/R/eva.cop6.R denpro/R/vols.complex.R denpro/R/volball.R denpro/R/treedisc.R denpro/R/plotbary.R denpro/R/etaisrec.R denpro/R/etais.R denpro/R/eva.t.R denpro/R/tail.plot.R denpro/R/excmas.R denpro/R/lambda2emass.R denpro/R/joinconne.R denpro/R/intersec.R denpro/R/leafsfirst.complex.volu.R denpro/R/touchi.simp.R denpro/R/mtest.R denpro/R/addnode.R denpro/R/paracoor.R denpro/R/leikkaa.R denpro/R/eval.func.dD.R denpro/R/leafsfirst.visu.R denpro/R/omaind.R denpro/R/cumu.R denpro/R/tailfunc.R denpro/R/drawgene.R denpro/R/pcf.kern.R denpro/R/sim.fox.R denpro/R/dotouch.R denpro/R/change.R denpro/R/omaord2.R denpro/R/drawhist.R denpro/R/blokitus.R denpro/R/makeparent.R denpro/R/plotexmap.R denpro/R/touchstep.complex.R denpro/R/point.eval.R denpro/R/ccentedya.R denpro/R/support.R denpro/R/touchstep.tail.R denpro/R/pcf.boundary.R denpro/R/paracoor.dens.R denpro/R/touchi.tail.R denpro/R/plotdata.R denpro/R/simmix1d.R denpro/R/eva.student.R denpro/R/sim.tetra3d.R denpro/R/pp.plot.R denpro/R/sim.claw.R denpro/R/exmap.R denpro/R/depth2com.R denpro/R/decom.R denpro/R/rotation2d.R denpro/R/allokoi.new.R denpro/R/draw.kern.R denpro/R/leafsfirst.adagrid.R denpro/R/pcf.histo.R denpro/R/alpha.complex.R denpro/R/omaord.R denpro/R/graph.matrix.level.R denpro/R/siborToModor.R denpro/R/scaletable.R denpro/R/travel.tree.R denpro/R/colobary.merge.R denpro/R/cvolumbag.R denpro/R/intersec.simpces.R denpro/R/is.inside.simp.R denpro/R/touchi.boundary.R denpro/R/decombag.R denpro/R/prof2vecs.R denpro/R/sim.nested.R denpro/R/eva.clayton.R denpro/R/perspec.dyna.R denpro/R/leafsfirst.delaunay.R denpro/R/graph.matrix.R denpro/R/intersec.simpces2.R denpro/R/cutmut.R denpro/R/quanti.R denpro/R/levord.R denpro/R/alloroot.R denpro/R/is.inside.simp.bary.R denpro/R/modegraph.R denpro/R/cinte.R denpro/R/touchstep.delaunay.R denpro/R/colorsofdata.new.R denpro/R/pituus.R denpro/R/profhist.R denpro/R/is.inside.R denpro/R/rotation3d.R denpro/R/complex.rips.R denpro/R/sim.1d2modal.R denpro/R/declev.R denpro/R/sim.cross.R denpro/R/declevdya.R denpro/R/findbranch.R denpro/R/liketree.R denpro/R/modetestydin.R denpro/R/plottwin.R denpro/R/prunemodes.R denpro/R/toucrec.R denpro/R/decomdya.R denpro/R/locofmax.R denpro/R/plotinfo.R denpro/R/kernesti.dens.R denpro/R/declevnew.R denpro/R/colorsofdata.adagrid2.R denpro/R/excmas.bylevel.R denpro/R/plotdelineator.R denpro/R/massone.R denpro/R/treedisc.intpol.R denpro/R/branchmap.R denpro/R/sim.peaks.R denpro/R/eva.skewgauss.R denpro/R/onsetissa.R denpro/R/proftree.R denpro/R/tail.plot.dens.R denpro/R/denpro.R denpro/R/touchstep.boundary.R denpro/R/histo.R denpro/R/stseq.R denpro/R/modetest.R denpro/R/colorsofdata3.R denpro/R/eva.hat.R denpro/R/colors2data.R denpro/R/maxnodenum.R denpro/R/til2.R denpro/R/cfrekv.R denpro/R/ccentebag.R denpro/R/vectomatch.R denpro/R/sim.penta4d.R denpro/R/negapart.R denpro/R/plotbranchmap.R denpro/R/plotvolu.R denpro/R/cintemul.R denpro/R/slicing.R denpro/R/eva.gauss.R denpro/R/nn.likeset.R denpro/R/rotation.R denpro/R/colobary.nodes.R denpro/R/epan.R denpro/R/plot.histo.R denpro/R/sphere.para.R denpro/R/makeinfo.R denpro/R/taillevel.R denpro/R/colo2scem.R denpro/R/leafsfirst.lst.R denpro/R/intersec.edges.R denpro/R/pruneprof.R denpro/R/colobary.R denpro/R/plotvecs.R denpro/R/is.inside.simp.long.R denpro/R/leafsfirst.boundary.R denpro/R/omamin.R denpro/R/siborder.R denpro/R/leafsfirst.complex.R denpro/R/sim.mulmod.R denpro/R/joingene.R denpro/R/cenone.R denpro/R/leafsfirst.intpol.volu.R denpro/R/colorsofdata2.R denpro/R/cutvalue.R denpro/R/til1.R denpro/R/colorsofdata.adagrid.R
denpro/MD5
denpro/DESCRIPTION
denpro/man
denpro/man/draw.pcf.Rd denpro/man/plotbranchmap.Rd denpro/man/modegraph.Rd denpro/man/plottree.Rd denpro/man/branchmap.Rd denpro/man/shape2d.Rd denpro/man/undocumented.Rd denpro/man/scaletable.Rd denpro/man/denpro-package.Rd denpro/man/hgrid.Rd denpro/man/paracoor.Rd denpro/man/pcf.func.Rd denpro/man/lstseq.kern.Rd denpro/man/plotvolu.Rd denpro/man/stseq.Rd denpro/man/slicing.Rd denpro/man/treedisc.Rd denpro/man/colors2data.Rd denpro/man/profkern.Rd denpro/man/profhist.Rd denpro/man/modecent.Rd denpro/man/leafsfirst.Rd denpro/man/sim.data.Rd denpro/man/draw.levset.Rd denpro/man/plotexmap.Rd denpro/man/excmas.Rd denpro/man/pcf.kern.Rd denpro/man/plotvolu2d.Rd denpro/man/prunemodes.Rd denpro/man/profgene.Rd denpro/man/exmap.Rd denpro/man/tree.segme.Rd denpro/man/plotbary.Rd denpro/man/findbnodes.Rd denpro/man/plotmodet.Rd denpro/man/locofmax.Rd denpro/man/leafsfirst.adagrid.Rd

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