denpro: Visualization of Multivariate Functions, Sets, and Data
Version 0.9.2

We provide tools to (1) visualize multivariate density functions and density estimates with level set trees, (2) visualize level sets with shape trees, (3) visualize multivariate data with tail trees, (4) visualize scales of multivariate density estimates with mode graphs and branching maps, and (5) visualize anisotropic spread with 2D volume functions and 2D probability content functions. Level set trees visualize mode structure, shape trees visualize shapes of level sets of unimodal densities, and tail trees visualize connected data sets. The kernel estimator is implemented but the package may also be applied for visualizing other density estimates.

AuthorJussi Klemela <jussi.klemela@gmail.com>
Date of publication2015-05-22 19:38:40
MaintainerJussi Klemela <jussi.klemela@gmail.com>
LicenseGPL (>= 2)
Version0.9.2
URL http://jussiklemela.com/denpro/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("denpro")

Getting started

Package overview

Popular man pages

denpro-package: Visualization of Multivariate Functions, Sets, and Data
draw.levset: Plots a level set of a 2D function
draw.pcf: Prepares the plotting of a 2D or 1D piecewise constant...
plotvolu: Makes a volume plot of a level set tree, a shape plot of a...
plotvolu2d: Makes a perspective plot of a 2D volume function or a 2D...
profgene: Calculates the level set tree of a rectangularwise constant...
treedisc: Prunes a level set tree or a tail tree
See all...

All man pages Function index File listing

Man pages

branchmap: Computes a branching map from a sequence of level set trees
colors2data: Assigns colors to data points
denpro-package: Visualization of Multivariate Functions, Sets, and Data
draw.levset: Plots a level set of a 2D function
draw.pcf: Prepares the plotting of a 2D or 1D piecewise constant...
excmas: Computes the excess masses associated with the nodes of a...
exmap: Computes a scale of excess mass profiles
findbnodes: Finds pointers to the nodes of a level set tree
hgrid: Returns a grid of smoothing parameter values
leafsfirst: Computes a level set tree, shape tree, or tail tree
leafsfirst.adagrid: Computes a level set tree of a discretized kernel estimator...
locofmax: Calculates the location of the maximum of a function
lstseq.kern: Calculates a scale of kernel estimates
modecent: Returns locations of modes of a density estimate
modegraph: Calculates a mode graph from a scale of estimates
paracoor: Makes a parallel coordinate plot
pcf.func: Calculates a piecewise constant function for some...
pcf.kern: Computes a multivariate kernel estimate
plotbary: Makes a barycenter plot of a level set tree, a location plot...
plotbranchmap: Plots a branching map
plotexmap: Plots a scale of excess mass profiles
plotmodet: Plots a mode graph
plottree: Makes a tree plot of a level set tree, of a shape tree, or of...
plotvolu: Makes a volume plot of a level set tree, a shape plot of a...
plotvolu2d: Makes a perspective plot of a 2D volume function or a 2D...
profgene: Calculates the level set tree of a rectangularwise constant...
profhist: Calculates the level set tree of a histogram
profkern: Calculates a level set tree of a kernel estimate
prunemodes: Prunes modes away from a level set tree or a shape tree
scaletable: Implements the scale and shape table
shape2d: Returns a 2D volume function or 2D probability content...
sim.data: Generates data for illustrative purposes
slicing: Returns a one- or two-dimensional slice of a multivariate...
stseq: Calculates a sequence of radius functions from a sequence of...
treedisc: Prunes a level set tree or a tail tree
tree.segme: Returns the segmentation of the nodes of a visualization tree
undocumented: Undocumented functions

Functions

addnode Source code Source code
allokoi Source code Source code
allokoi.new Source code Source code
alloroot Source code Source code
alpha.complex Source code Source code
blokitus Man page Source code Source code
blokitus2 Source code Source code
boundbox Source code Source code
branchmap Man page Source code Source code
ccente Source code Source code
ccentebag Source code Source code
ccentedya Source code Source code
cenone Source code Source code
cfrekv Source code Source code
change Source code Source code
cinte Source code Source code
cintemul Source code Source code
colo2scem Source code Source code
coloallo Source code Source code
colobary Source code Source code
colobary.merge Source code Source code
colobary.nodes Source code Source code
colobary.roots Source code Source code
colors2data Man page Source code Source code
colorsofdata Man page Source code Source code
colorsofdata.adagrid Source code Source code
colorsofdata.adagrid.new Source code Source code
colorsofdata.adagrid2 Source code Source code
colorsofdata.new Source code Source code
colorsofdata.tail Source code Source code
colorsofdata2 Source code Source code
colorsofdata3 Source code Source code
complex.rips Source code Source code
cumu Source code Source code
cutmut Source code Source code
cutvalue Source code Source code
cvolum Source code Source code
cvolumbag Source code Source code
cvolumdya Source code Source code
declev Source code Source code
declevdya Source code Source code
declevgen Source code Source code
declevnew Source code Source code
decom Source code Source code
decombag Source code Source code
decomdya Source code Source code
den2reg Source code Source code
dend2parent Source code Source code
dendat2lst Source code Source code
denpro Man page
denpro-package Man page
depth Source code Source code
depth2com Source code Source code
digit Source code Source code
dist.func Source code Source code
dotouch Source code Source code
dotouchgen Source code Source code
draw.kern Source code Source code
draw.levset Man page Source code Source code
draw.pcf Man page Source code Source code
drawgene Source code Source code
drawhist Source code Source code
epan Source code Source code
epane Source code Source code
etais Man page Source code Source code
etaisrec Source code Source code
eva.clayton Source code Source code
eva.cop6 Source code Source code
eva.copula Source code Source code
eva.gauss Source code Source code
eva.hat Source code Source code
eva.lognormal Source code Source code
eva.plackett Source code Source code
eva.prod Source code Source code
eva.skewgauss Source code Source code
eva.student Source code Source code
eva.t Source code Source code
eval.func.1D Source code Source code
eval.func.dD Source code Source code
evanor Man page Source code Source code
excmas Man page Source code Source code
excmas.bylevel Source code Source code
exmap Man page Source code Source code
explo.compa Source code Source code
findbnodes Man page Source code Source code
findbranch Source code Source code
findbranch.pare Source code Source code
findend Source code Source code
findleafs Source code Source code
findneighbor Source code Source code
fs.calc Source code Source code
fs.calc.parti Man page Source code Source code
graph.matrix Source code Source code
graph.matrix.level Source code Source code
hgrid Man page Source code Source code
histo Source code Source code
histo1d Source code Source code
histo2data Source code Source code
intersec Source code Source code
intersec.edges Source code Source code
intersec.simpces Source code Source code
intersec.simpces2 Source code Source code
is.inside Source code Source code
is.inside.simp Source code Source code
is.inside.simp.bary Source code Source code
is.inside.simp.long Source code Source code
joincongen Source code Source code
joinconne Source code Source code
joingene Source code Source code
kereva Source code Source code
kergrid Source code Source code
kernesti.dens Man page Source code Source code
lambda2emass Source code Source code
leafsfirst Man page Source code Source code
leafsfirst.adagrid Man page Source code Source code
leafsfirst.bondary Source code Source code
leafsfirst.complex Source code Source code
leafsfirst.complex.volu Source code Source code
leafsfirst.delaunay Source code Source code
leafsfirst.intpol Source code Source code
leafsfirst.intpol.volu Source code Source code
leafsfirst.lst Source code Source code
leafsfirst.new Source code Source code
leafsfirst.nn Source code Source code
leafsfirst.shape Source code Source code
leafsfirst.tail Source code Source code
leafsfirst.visu Source code Source code
leikkaa Source code Source code
levord Source code Source code
liketree Source code Source code
listchange Source code Source code
locofmax Man page Source code Source code
lst2xy Source code Source code
lstseq.kern Man page Source code Source code
makehis Source code Source code
makeinfo Source code Source code
makeparent Source code Source code
massat Source code Source code
massone Source code Source code
maxnodenum Source code Source code
modecent Man page Source code Source code
modegraph Man page Source code Source code
modetest Source code Source code
modetestgauss Source code Source code
modetestydin Source code Source code
montecarlo.ball Source code Source code
montecarlo.complex Source code Source code
moodilkm Man page Source code Source code
mtest Source code Source code
multitree Source code Source code
negapart Source code Source code
nn.indit Source code Source code
nn.likeset Source code Source code
nn.radit Source code Source code
nnt Source code Source code
omaind Source code Source code
omamax Source code Source code
omamin Source code Source code
omaord Source code Source code
omaord2 Source code Source code
onko Source code Source code
onsetissa Source code Source code
paraclus Source code Source code
paracoor Man page Source code Source code
paracoor.dens Source code Source code
pcf.boundary Source code Source code
pcf.func Man page Source code Source code
pcf.histo Source code Source code
pcf.kern Man page Source code Source code
pcf.kern.vech Source code Source code
pcf.kernC Source code Source code
pcf.matrix Source code Source code
perspec.dyna Source code Source code
pituus Source code Source code
plot.complex Source code Source code
plot.histdata Source code Source code
plot.histo Source code Source code
plot.kernscale Source code Source code
plotbary Man page Source code Source code
plotbary.slide Source code Source code
plotbranchmap Man page Source code Source code
plotdata Source code Source code
plotdelineator Source code Source code
plotexmap Man page Source code Source code
plotinfo Source code Source code
plotmodet Man page Source code Source code
plotprof Source code Source code
plottext Source code Source code
plottree Man page Source code Source code
plottwin Source code Source code
plotvecs Source code Source code
plotvolu Man page Source code Source code
plotvolu.new Source code Source code
plotvolu2d Man page Source code Source code
point.eval Source code Source code
posipart Source code Source code
pp.plot Source code Source code
preprocess Source code Source code
prof2vecs Source code Source code
profgene Man page Source code Source code
profhist Man page Source code Source code
profkern Man page Source code Source code
profkernC Source code Source code
profkernCRC Source code Source code
profkernR Source code Source code
proftree Man page Source code Source code
proftreeR Source code Source code
prunemodes Man page Source code Source code
pruneprof Source code Source code
qq.plot Source code Source code
quanti Source code Source code
rota.seq Source code Source code
rotation Source code Source code
rotation2d Source code Source code
rotation3d Source code Source code
scaletable Man page Source code Source code
shape2d Man page Source code Source code
shapetree Source code Source code
siborToModor Source code Source code
siborder Source code Source code
siborder.new Source code Source code
sim.1d2modal Source code Source code
sim.claw Source code Source code
sim.cross Source code Source code
sim.data Man page Source code Source code
sim.fox Source code Source code
sim.fssk Source code Source code
sim.mulmod Source code Source code
sim.mulmodII Source code Source code
sim.nested Source code Source code
sim.peaks Source code Source code
sim.penta4d Source code Source code
sim.tetra3d Source code Source code
simmix Source code Source code
simmix1d Source code Source code
simukern Source code Source code
slicing Man page Source code Source code
sphere.map Source code Source code
sphere.para Source code Source code
stseq Man page Source code Source code
support Source code Source code
tail.plot Source code Source code
tail.plot.dens Source code Source code
tailfunc Source code Source code
taillevel Source code Source code
til Source code Source code
til1 Source code Source code
til2 Source code Source code
touch Source code Source code
touchi Source code Source code
touchi.boundary Source code Source code
touchi.dela Source code Source code
touchi.simp Source code Source code
touchi.tail Source code Source code
touchstep Source code Source code
touchstep.boundary Source code Source code
touchstep.complex Source code Source code
touchstep.delaunay Source code Source code
touchstep.tail Source code Source code
toucrec Source code Source code
travel.tree Source code Source code
tree.segme Man page Source code Source code
treedisc Man page Source code Source code
treedisc.ada Source code Source code
treedisc.intpol Source code Source code
vectomatch Source code Source code
volball Source code Source code
vols.complex Source code Source code
volsimplex Source code Source code
voltriangle Source code Source code
weightsit Source code Source code

Files

src
src/kerprof.c
src/proftree.c
src/kereva.c
src/kernsta.c
NAMESPACE
R
R/digit.R
R/eval.func.1D.R
R/sim.mulmodII.R
R/onko.R
R/posipart.R
R/rota.seq.R
R/dend2parent.R
R/declevgen.R
R/plot.kernscale.R
R/shapetree.R
R/plotvolu.new.R
R/shape2d.R
R/sim.fssk.R
R/findbnodes.R
R/massat.R
R/profkern.R
R/draw.levset.R
R/touch.R
R/plotbary.slide.R
R/lstseq.kern.R
R/dendat2lst.R
R/eva.copula.R
R/plotprof.R
R/plot.histdata.R
R/plottext.R
R/explo.compa.R
R/nn.radit.R
R/coloallo.R
R/touchi.R
R/touchi.dela.R
R/draw.pcf.R
R/leafsfirst.tail.R
R/histo1d.R
R/plot.complex.R
R/simmix.R
R/modetestgauss.R
R/colobary.roots.R
R/histo2data.R
R/kergrid.R
R/findbranch.pare.R
R/touchstep.R
R/profkernCRC.R
R/pcf.kern.vech.R
R/eva.lognormal.R
R/fs.calc.R
R/joincongen.R
R/plotvolu2d.R
R/volsimplex.R
R/pcf.func.R
R/blokitus2.R
R/boundbox.R
R/dotouchgen.R
R/evanor.R
R/den2reg.R
R/fs.calc.parti.R
R/preprocess.R
R/modecent.R
R/dist.func.R
R/allokoi.R
R/til.R
R/findneighbor.R
R/voltriangle.R
R/makehis.R
R/sphere.map.R
R/plottree.R
R/nnt.R
R/tree.segme.R
R/multitree.R
R/findleafs.R
R/eva.prod.R
R/profgene.R
R/leafsfirst.new.R
R/plotmodet.R
R/leafsfirst.shape.R
R/leafsfirst.R
R/colorsofdata.R
R/moodilkm.R
R/cvolumdya.R
R/lst2xy.R
R/sim.data.R
R/ccente.R
R/pcf.matrix.R
R/depth.R
R/eva.plackett.R
R/siborder.new.R
R/findend.R
R/qq.plot.R
R/colorsofdata.adagrid.new.R
R/profkernC.R
R/pcf.kernC.R
R/hgrid.R
R/paraclus.R
R/montecarlo.ball.R
R/proftreeR.R
R/leafsfirst.nn.R
R/treedisc.ada.R
R/montecarlo.complex.R
R/epane.R
R/profkernR.R
R/omamax.R
R/nn.indit.R
R/kereva.R
R/simukern.R
R/colorsofdata.tail.R
R/leafsfirst.intpol.R
R/listchange.R
R/weightsit.R
R/cvolum.R
R/eva.cop6.R
R/vols.complex.R
R/volball.R
R/treedisc.R
R/plotbary.R
R/etaisrec.R
R/etais.R
R/eva.t.R
R/tail.plot.R
R/excmas.R
R/lambda2emass.R
R/joinconne.R
R/intersec.R
R/leafsfirst.complex.volu.R
R/touchi.simp.R
R/mtest.R
R/addnode.R
R/paracoor.R
R/leikkaa.R
R/eval.func.dD.R
R/leafsfirst.visu.R
R/omaind.R
R/cumu.R
R/tailfunc.R
R/drawgene.R
R/pcf.kern.R
R/sim.fox.R
R/dotouch.R
R/change.R
R/omaord2.R
R/drawhist.R
R/blokitus.R
R/makeparent.R
R/plotexmap.R
R/touchstep.complex.R
R/point.eval.R
R/ccentedya.R
R/support.R
R/touchstep.tail.R
R/pcf.boundary.R
R/paracoor.dens.R
R/touchi.tail.R
R/plotdata.R
R/simmix1d.R
R/eva.student.R
R/sim.tetra3d.R
R/pp.plot.R
R/sim.claw.R
R/exmap.R
R/depth2com.R
R/decom.R
R/rotation2d.R
R/allokoi.new.R
R/draw.kern.R
R/leafsfirst.adagrid.R
R/pcf.histo.R
R/alpha.complex.R
R/omaord.R
R/graph.matrix.level.R
R/siborToModor.R
R/scaletable.R
R/travel.tree.R
R/colobary.merge.R
R/cvolumbag.R
R/intersec.simpces.R
R/is.inside.simp.R
R/touchi.boundary.R
R/decombag.R
R/prof2vecs.R
R/sim.nested.R
R/eva.clayton.R
R/perspec.dyna.R
R/leafsfirst.delaunay.R
R/graph.matrix.R
R/intersec.simpces2.R
R/cutmut.R
R/quanti.R
R/levord.R
R/alloroot.R
R/is.inside.simp.bary.R
R/modegraph.R
R/cinte.R
R/touchstep.delaunay.R
R/colorsofdata.new.R
R/pituus.R
R/profhist.R
R/is.inside.R
R/rotation3d.R
R/complex.rips.R
R/sim.1d2modal.R
R/declev.R
R/sim.cross.R
R/declevdya.R
R/findbranch.R
R/liketree.R
R/modetestydin.R
R/plottwin.R
R/prunemodes.R
R/toucrec.R
R/decomdya.R
R/locofmax.R
R/plotinfo.R
R/kernesti.dens.R
R/declevnew.R
R/colorsofdata.adagrid2.R
R/excmas.bylevel.R
R/plotdelineator.R
R/massone.R
R/treedisc.intpol.R
R/branchmap.R
R/sim.peaks.R
R/eva.skewgauss.R
R/onsetissa.R
R/proftree.R
R/tail.plot.dens.R
R/denpro.R
R/touchstep.boundary.R
R/histo.R
R/stseq.R
R/modetest.R
R/colorsofdata3.R
R/eva.hat.R
R/colors2data.R
R/maxnodenum.R
R/til2.R
R/cfrekv.R
R/ccentebag.R
R/vectomatch.R
R/sim.penta4d.R
R/negapart.R
R/plotbranchmap.R
R/plotvolu.R
R/cintemul.R
R/slicing.R
R/eva.gauss.R
R/nn.likeset.R
R/rotation.R
R/colobary.nodes.R
R/epan.R
R/plot.histo.R
R/sphere.para.R
R/makeinfo.R
R/taillevel.R
R/colo2scem.R
R/leafsfirst.lst.R
R/intersec.edges.R
R/pruneprof.R
R/colobary.R
R/plotvecs.R
R/is.inside.simp.long.R
R/leafsfirst.boundary.R
R/omamin.R
R/siborder.R
R/leafsfirst.complex.R
R/sim.mulmod.R
R/joingene.R
R/cenone.R
R/leafsfirst.intpol.volu.R
R/colorsofdata2.R
R/cutvalue.R
R/til1.R
R/colorsofdata.adagrid.R
MD5
DESCRIPTION
man
man/draw.pcf.Rd
man/plotbranchmap.Rd
man/modegraph.Rd
man/plottree.Rd
man/branchmap.Rd
man/shape2d.Rd
man/undocumented.Rd
man/scaletable.Rd
man/denpro-package.Rd
man/hgrid.Rd
man/paracoor.Rd
man/pcf.func.Rd
man/lstseq.kern.Rd
man/plotvolu.Rd
man/stseq.Rd
man/slicing.Rd
man/treedisc.Rd
man/colors2data.Rd
man/profkern.Rd
man/profhist.Rd
man/modecent.Rd
man/leafsfirst.Rd
man/sim.data.Rd
man/draw.levset.Rd
man/plotexmap.Rd
man/excmas.Rd
man/pcf.kern.Rd
man/plotvolu2d.Rd
man/prunemodes.Rd
man/profgene.Rd
man/exmap.Rd
man/tree.segme.Rd
man/plotbary.Rd
man/findbnodes.Rd
man/plotmodet.Rd
man/locofmax.Rd
man/leafsfirst.adagrid.Rd
denpro documentation built on May 19, 2017, 9:45 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.