densityClust: Clustering by Fast Search and Find of Density Peaks

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An implementation of the clustering algorithm described by Alex Rodriguez and Alessandro Laio (Science, 2014 vol. 344), along with tools to inspect and visualize the results.

Author
Thomas Lin Pedersen [aut, cre], Sean Hughes [aut]
Date of publication
2016-02-06 13:47:07
Maintainer
Thomas Lin Pedersen <thomasp85@gmail.com>
License
GPL (>= 2)
Version
0.2.1

View on CRAN

Man pages

clustered
Check whether a densityCluster object have been clustered
clusters
Extract cluster membership from a densityCluster object
densityClust
Calculate clustering attributes based on the densityClust...
densityClust-package
Clustering by fast search and find of density peaks
estimateDc
Estimate the distance cutoff for a specified neighbor rate
findClusters
Detect clusters in a densityCluster obejct
plotMDS
Plot observations using multidimensional scaling and colour...

Files in this package

densityClust
densityClust/tests
densityClust/tests/testthat.R
densityClust/tests/testthat
densityClust/tests/testthat/generateReference.R
densityClust/tests/testthat/testEquivalenceToReferenceImplementation.R
densityClust/src
densityClust/src/distanceToPeak.cpp
densityClust/src/localDensity.cpp
densityClust/src/RcppExports.cpp
densityClust/NAMESPACE
densityClust/R
densityClust/R/densityClust.R
densityClust/R/RcppExports.R
densityClust/README.md
densityClust/MD5
densityClust/DESCRIPTION
densityClust/man
densityClust/man/clustered.Rd
densityClust/man/plotMDS.Rd
densityClust/man/densityClust-package.Rd
densityClust/man/clusters.Rd
densityClust/man/densityClust.Rd
densityClust/man/estimateDc.Rd
densityClust/man/findClusters.Rd