desiR: Desirability Functions for Ranking, Selecting, and Integrating Data

Functions for (1) ranking, selecting, and prioritising genes, proteins, and metabolites from high dimensional biology experiments, (2) multivariate hit calling in high content screens, and (3) combining data from diverse sources.

Author
Stanley E. Lazic
Date of publication
2016-01-10 09:03:33
Maintainer
Stanley E. Lazic <stan.lazic@cantab.net>
License
GPL-3
Version
1.2
URLs

View on CRAN

Man pages

d.4pl
Four parameter logistic desirability function
d.central
Central values are desirable
d.ends
Extreme (both high and low) values are desirable
des.line
Plots a desirability function on an existing graph
d.high
High values are desirable
d.low
Low values are desirable
d.overall
Combine individual desirabilities
d.rank
Converts values to ranks, then ranks to desirabilities
farmer2005
Breast cancer microarray dataset

Files in this package

desiR
desiR/inst
desiR/inst/CITATION
desiR/inst/doc
desiR/inst/doc/Gene_ranking.Rmd
desiR/inst/doc/Gene_ranking.pdf
desiR/inst/doc/Gene_ranking.R
desiR/NAMESPACE
desiR/data
desiR/data/farmer2005.rda
desiR/R
desiR/R/d.rank.R
desiR/R/d.overall.R
desiR/R/d.ends.R
desiR/R/d.central.R
desiR/R/farmer2005.R
desiR/R/d.4pl.R
desiR/R/d.low.R
desiR/R/des.line.R
desiR/R/d.high.R
desiR/vignettes
desiR/vignettes/Gene_ranking.Rmd
desiR/vignettes/Gene_ranking.html
desiR/MD5
desiR/build
desiR/build/vignette.rds
desiR/DESCRIPTION
desiR/man
desiR/man/d.ends.Rd
desiR/man/des.line.Rd
desiR/man/d.high.Rd
desiR/man/d.central.Rd
desiR/man/d.rank.Rd
desiR/man/d.4pl.Rd
desiR/man/d.low.Rd
desiR/man/d.overall.Rd
desiR/man/farmer2005.Rd