Files in designit

Blocking and Randomization for Experimental Design

NEWS.md README.md R/score_aggregation.R R/all_equal_df.R R/osat.R R/batch_container.R R/assignment.R R/data.R R/sim_annealing.R R/designit-package.R R/formula_utils.R R/batch_container_dimension.R R/plot.R R/permute_subgroups.R R/score_autoscaling.R R/optimize.R R/trace.R R/batch_container_from_table.R R/utils-datatable.R R/shuffle_samples.R R/score_accept.R R/score_plates.R inst/doc/optimizer_examples.R inst/doc/nested_dimensions_examples.Rmd inst/doc/basic_examples.Rmd inst/doc/basic_examples.R inst/doc/NCS22_talk.Rmd inst/doc/osat.R inst/doc/plate_layouts.R inst/doc/NCS22_talk.R inst/doc/plate_layouts.Rmd inst/doc/custom_shuffle.R inst/doc/invivo_study_design.Rmd inst/doc/invivo_study_design.R inst/doc/shuffling_with_constraints.Rmd inst/doc/shuffling_with_constraints.R inst/doc/osat.Rmd inst/doc/optimizer_examples.Rmd inst/doc/custom_shuffle.Rmd inst/doc/nested_dimensions_examples.R tests/testthat.R tests/testthat/test_optimize_design_simple_shuffle.R tests/testthat/test_batch_container_dimension.R tests/testthat/test-compute-score-vector.R tests/testthat/test-sample_attr.R tests/testthat/test_assign_random.R tests/testthat/test_optimize_design.R tests/testthat/test_optimize_design_uses_all_locations.R tests/testthat/test-scoring-names.R tests/testthat/test_exclude.R tests/testthat/test_osat_NA.R tests/testthat/test_batch_container_from_table.R tests/testthat/test_assign_from_table.R tests/testthat/test_assign_locations_from_table.R tests/testthat/test_batch_container.R tests/testthat/test-all-equal.R tests/testthat/test_copy_samples_cache.R tests/testthat/test_mk_shuffle_function.R tests/testthat/test_samples_attr.R tests/testthat/test_optimize_design_complete_random_shuffle.R tests/testthat/test_get_samples.R tests/testthat/test_move_samples.R tests/testthat/test_scores.R tests/testthat/test-save-random-seed.R tests/testthat/test_no_shuff_proposed.R vignettes/nested_dimensions_examples.Rmd vignettes/basic_examples.Rmd vignettes/NCS22_talk.Rmd vignettes/plate_layouts.Rmd vignettes/invivo_study_design.Rmd vignettes/shuffling_with_constraints.Rmd vignettes/osat.Rmd vignettes/optimizer_examples.Rmd vignettes/custom_shuffle.Rmd vignettes/cached/README.md man/sample_random_scores.Rd man/complete_random_shuffling.Rd man/get_order.Rd man/mk_constant_swapping_function.Rd man/drop_order.Rd man/batch_container_from_table.Rd man/generate_terms.Rd man/locations_table_from_dimensions.Rd man/all_equal_df.Rd man/shuffle_with_constraints.Rd man/random_score_variances.Rd man/osat_score.Rd man/shuffle_grouped_data.Rd man/dot-datatable.aware.Rd man/mk_plate_scoring_functions.Rd man/mk_dist_matrix.Rd man/L1_norm.Rd man/invivo_study_samples.Rd man/validate_subgrouping_object.Rd man/BatchContainer.Rd man/plate_effect_example.Rd man/update_batchcontainer.Rd man/multi_trt_day_samples.Rd man/plot_plate.Rd man/assign_in_order.Rd man/L2s_norm.Rd man/extract_shuffle_params.Rd man/mk_subgroup_shuffling_function.Rd man/form_homogeneous_subgroups.Rd man/worst_score.Rd man/report_scores.Rd man/make_colnames.Rd man/find_possible_block_allocations.Rd man/sum_scores.Rd man/assign_random.Rd man/mk_swapping_function.Rd man/shuffle_with_subgroup_formation.Rd man/first_score_only.Rd man/osat_score_generator.Rd man/optimize_design.Rd man/mk_simanneal_temp_func.Rd man/BatchContainerDimension.Rd man/longitudinal_subject_samples.Rd man/accept_strict_improvement.Rd man/invivo_study_treatments.Rd man/optimize_multi_plate_design.Rd man/validate_samples.Rd man/designit-package.Rd man/accept_leftmost_improvement.Rd man/assign_from_table.Rd man/pairwise_swapping.Rd man/compile_possible_subgroup_allocation.Rd man/shrink_mat.Rd man/mk_exponentially_weighted_acceptance_func.Rd man/mk_autoscale_function.Rd man/mk_simanneal_acceptance_func.Rd man/simanneal_acceptance_prob.Rd man/examples/assignment.R man/examples/two_step_optimization.R man/examples/shuffle_with_constraints.R