diat_cemfgs_rb: Calculate the combined classification of ecological guilds...

In diathor: Calculate Ecological Information and Diatom Based Indices

Calculate the combined classification of ecological guilds and size classes for diatoms

Description

The input for these functions is the resulting dataframe obtained from the diat_loadData() function, to calculate the ecological guilds for the diatoms Sample data in the examples is taken from:

• Nicolosi Gelis, María Mercedes; Cochero, Joaquín; Donadelli, Jorge; Gómez, Nora. 2020. "Exploring the use of nuclear alterations, motility and ecological guilds in epipelic diatoms as biomonitoring tools for water quality improvement in urban impacted lowland streams". Ecological Indicators, 110, 105951. https://doi:10.1016/j.ecolind.2019.105951

Classification is obtained from:

• B-Béres, V., Török, P., Kókai, Z., Lukács, Á., Enikő, T., Tóthmérész, B., & Bácsi, I. (2017). Ecological background of diatom functional groups: Comparability of classification systems. Ecological Indicators, 82, 183-188.

Usage

diat_cemfgs_rb(resultLoad)

Arguments

resultLoad

The resulting list obtained from the diat_loadData() function

Examples

# Example using sample data included in the package (sampleData):
data("diat_sampleData")
# First, the diat_loadData() function has to be called to read the data
# The data will be stored into a list (loadedData)
# And an output folder will be selected through a dialog box if resultsPath is empty
# In the example, a temporary directory will be used in resultsPath
df <- diat_loadData(diat_sampleData, resultsPath = tempdir())
guildsResults <- diat_cemfgs_rb(df)

diathor documentation built on March 18, 2022, 7:25 p.m.