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diemr: Genome Polarization via Diagnostic Index Expectation Maximization
Implements a likelihood-based method for genome polarization, identifying which alleles of SNV markers belong to either side of a barrier to gene flow. The approach co-estimates individual assignment, barrier strength, and divergence between sides, with direct application to studies of hybridization. Includes VCF-to-diem conversion and input checks, support for mixed ploidy and parallelization, and tools for visualization and diagnostic outputs. Based on diagnostic index expectation maximization as described in Baird et al. (2023) <doi:10.1111/2041-210X.14010>.
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Package details |
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| Author | Natalia Martinkova [aut, cre] (ORCID: <https://orcid.org/0000-0003-4556-4363>), Stuart Baird [aut] (ORCID: <https://orcid.org/0000-0002-7144-9919>) |
| Maintainer | Natalia Martinkova <martinkova@ivb.cz> |
| License | GPL (>= 3) |
| Version | 1.5.2 |
| URL | https://nmartinkova.github.io/genome-polarisation/ |
| Package repository | View on CRAN |
| Installation |
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