Man pages for diemr
Genome Polarization via Diagnostic Index Expectation Maximization
| brenthis | Dataset of Butterfly Genotypes |
| CheckDiemFormat | diem input file checker |
| diem | Diagnostic Index Expectation Maximisation |
| emPolarise | Polarises a marker |
| hybridIndex | Compute hybrid index from genotypes, files, or numeric values |
| importPolarized | Imports genomic data polarized according to the specification |
| markerAxis | Compute chromosome breakpoints and tick positions |
| ModelOfDiagnostic | Model of Diagnostic Marker Based on All Individual State... |
| myotis | Dataset of Modified Genotypes of Bats |
| pHetErrOnStateCount | Hybrid index, heterozygosity, error rate |
| plotDeFinetti | Plot the De Finetti Diagram for Polarized Genotypes |
| plotMarkerAxis | Add a Marker Axis with Chromosome Names to a Plot of... |
| plotPolarized | Plot Polarized Genotypes |
| rank2map | Convert SNP Ranks To Windows Corresponding to Mapping... |
| rank2mapChr | Map SNP positions to ranks within a genomic window |
| readIncludedSites | Read genomic sites from a BED-like file |
| resolveChosenInds | Resolve ChosenInds from a diem-formatted genotype file |
| resolveCompartments | Resolve compartments for diem input files |
| sImport | Import a single diem-formatted genotype file |
| smoothPolarizedGenotypes | Smooth Polarized Genotype States |
| sStateCount | Count states in a vector |
| testdata | Dataset of Fish Genotypes |
| truncatedLaplace | Compute truncated Laplace distribution weights |
| unbiasedWeightedStateChoice | Select the weighted mode of genomic states |
| variantSites | Identify Variant Sites in Genotype Files |
| vcf2diem | Convert vcf files to diem format |
