diffusionMap: Diffusion map

Implements diffusion map method of data parametrization, including creation and visualization of diffusion map, clustering with diffusion K-means and regression using adaptive regression model.

Author
Joseph Richards <joeyrichar@gmail.com>
Date of publication
2014-02-20 07:08:03
Maintainer
Joseph Richards <joeyrichar@gmail.com>
License
GPL-2
Version
1.1-0
URLs

View on CRAN

Man pages

adapreg
Adaptive Regression
adapreg.m
Adaptive Regression
annulus
Annulus toy data set
Chainlink
Chainlink toy clustering data set
diffuse
Compute diffusion map coordinates from pair-wise distances.
diffusionKmeans
Diffusion K-means
distortionMin
Distortion Minimization via K-means
epsilonCompute
Compute default diffusion map epsilon.
nystrom
Perform Nystrom Extension to estimate diffusion coordinates...
plot.dmap
Plot diffusion map
print.dmap
Extract diffusion map eigen-multipliers and epsilon

Files in this package

diffusionMap
diffusionMap/NAMESPACE
diffusionMap/data
diffusionMap/data/annulus.txt.gz
diffusionMap/data/Chainlink.txt.gz
diffusionMap/R
diffusionMap/R/nystrom.R
diffusionMap/R/adapreg.R
diffusionMap/R/print.dmap.R
diffusionMap/R/distortionMin.R
diffusionMap/R/plot.dmap.R
diffusionMap/R/epsilonCompute.R
diffusionMap/R/adapreg.m.R
diffusionMap/R/diffusionKmeans.R
diffusionMap/R/diffuse.R
diffusionMap/MD5
diffusionMap/DESCRIPTION
diffusionMap/man
diffusionMap/man/print.dmap.Rd
diffusionMap/man/nystrom.Rd
diffusionMap/man/Chainlink.Rd
diffusionMap/man/annulus.Rd
diffusionMap/man/epsilonCompute.Rd
diffusionMap/man/distortionMin.Rd
diffusionMap/man/plot.dmap.Rd
diffusionMap/man/adapreg.m.Rd
diffusionMap/man/adapreg.Rd
diffusionMap/man/diffuse.Rd
diffusionMap/man/diffusionKmeans.Rd