View source: R/expectreg.aft.R
expectreg.aft | R Documentation |
Estimate a set of conditional expectiles or quantiles with semiparametric predictors in accelerated failure time models. For the estimation, the asymmetric loss functions are reformulated into auxiliary likelihoods.
expectreg.aft(
formula,
data = NULL,
smooth = c("cvgrid", "aic", "bic", "lcurve", "fixed"),
lambda = 1,
expectiles = NA, ci = FALSE)
qureg.aft(
formula,
data = NULL,
smooth = c( "cvgrid", "aic", "bic", "lcurve", "fixed"),
lambda = 1,
quantiles = NA,
ci = FALSE)
formula |
An R formula object consisting of the response variable, '~' and the sum of all effects that should be taken into consideration. Each semiparametric effect has to be given through the function |
data |
Optional data frame containing the variables used in the model, if the data is not explicitely given in the formula. |
smooth |
There are different smoothing algorithms that tune |
lambda |
The fixed penalty can be adjusted. Also serves as starting value for the smoothing algorithms. |
expectiles |
In default setting, the expectiles (0.01,0.02,0.05,0.1,0.2,0.5,0.8,0.9,0.95,0.98,0.99) are calculated. You may specify your own set of expectiles in a vector. The option may be set to 'density' for the calculation of a dense set of expectiles that enhances the use of |
ci |
Whether a covariance matrix for confidence intervals and a |
quantiles |
Quantiles for which the regression should be performed. |
For expectile regression, the LAWS loss function
S = \sum_{i=1}^{n}{ w_i(p)(y_i - \mu_i(p))^2}
with
w_i(p) = p 1_{(y_i > \mu_i(p))} + (1-p) 1_{(y_i < \mu_i(p))}
is repackaged into the asymmetric normal distribution. Then, an accelerated failure time model is estimated. This function is based on the 'expectreg' package and uses the same functionality to include semiparametric predictors.
For quantile regression, the loss function is replaced with a likelihood from the asymmetric laplace distribution.
An object of class 'expectreg', which is basically a list consisting of:
lambda |
The final smoothing parameters for all expectiles and for all effects in a list. |
intercepts |
The intercept for each expectile. |
coefficients |
A matrix of all the coefficients, for each base element a row and for each expectile a column. |
values |
The fitted values for each observation and all expectiles, separately in a list for each effect in the model, sorted in order of ascending covariate values. |
response |
Vector of the response variable. |
covariates |
List with the values of the covariates. |
formula |
The formula object that was given to the function. |
asymmetries |
Vector of fitted expectile asymmetries as given by argument |
effects |
List of characters giving the types of covariates. |
helper |
List of additional parameters like neighbourhood structure for spatial effects or |
design |
Complete design matrix. |
bases |
Bases components of each covariate. |
fitted |
Fitted values |
covmat |
Covariance matrix, estimated when |
diag.hatma |
Diagonal of the hat matrix. Used for model selection criteria. |
data |
Original data |
smooth_orig |
Unchanged original type of smoothing. |
plot
, predict
, resid
,
fitted
, effects
and further convenient methods are available for class 'expectreg'.
Fabian Otto-Sobotka
Carl von Ossietzky University Oldenburg
https://uol.de
expectreg.ipc
, expectreg.ls
data(colcancer)
ex <- c(0.05, 0.2, 0.5, 0.8, 0.95)
c100 <- colcancer[1:100,]
exfit <- expectreg.aft(Surv(logfollowup, death) ~ LNE, data = c100, expectiles = ex, smooth="f")
coef(exfit)
qu1 <- qureg.aft(Surv(logfollowup, death) ~ LNE + sex, data=c100, smooth="fixed")
coef(qu1)
## Not run:
# takes some time
qu2 <- qureg.aft(Surv(logfollowup, death) ~ rb(LNE) + sex, data=colcancer[1:200,])
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.