dismo: Species Distribution Modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites and the environment at these sites.

AuthorRobert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Date of publication2017-01-09 09:49:36
MaintainerRobert J. Hijmans <r.hijmans@gmail.com>
LicenseGPL (>= 3)
Version1.1-4
http://rspatial.org/sdm/

View on CRAN

Man pages

acaule: Solanum acaule data

bioclim: Bioclim

biovars: bioclimatic variables

boxplot: Box plot of model evaluation data

calc.deviance: Calculate deviance

circleHull: Circle hull model

circles: Circles range

convexHull: Convex hull model

dcEvaluate: Evaluate by distance class

density: density

dismo-package: Species distribution modeling

DistModel: Class "DistModel"

domain: Domain

ecocrop: Ecocrop model

ecolim: Ecolim model

evaluate: Model evaluation

evaluateROCR: Model testing with the ROCR package

gbif: Data from GBIF

gbm.data: Anguilla australis distribution data

gbm.fixed: gbm fixed

gbm.holdout: gbm holdout

gbm.interactions: gbm interactions

gbm.persp: gbm perspective plot

gbm.plot: gbm plot

gbm.plot.fits: gbm plot fitted values

gbm.simplify: gbm simplify

gbm.step: gbm step

geocode: Georeferencing with Google

geoDist: Geographic distance model

geoIDW: Inverse-distance weighted model

gmap: Get a Google map

gridSample: Stratified regular sample on a grid

kfold: k-fold partitioning

mahal: Mahalanobis model

maxent: Maxent

mess: Multivariate environmental similarity surfaces (MESS)

ModelEvaluation: Class "ModelEvaluation"

nicheEquivalency: Niche equivalency

nicheOverlap: Niche overlap

nullRandom: Random null model

pairs: Pair plots

plot: Plot predictor values

plotEval: Plot model evaluation data

pointValues: point values

predict: Distribution model predictions

prepareData: Prepare data for model fitting

pwdSample: Pair-wise distance sampling

randomPoints: Random points

rectHull: Rectangular hull model

response: response plots

ssb: Spatial sorting bias

threshold: Find a threshold

voronoi: Voronoi polygons

voronoiHulll: Voronoi hull model

Files in this package

dismo
dismo/inst
dismo/inst/ex
dismo/inst/ex/bio7.grd
dismo/inst/ex/biome.gri
dismo/inst/ex/biome.grd
dismo/inst/ex/bio17.gri
dismo/inst/ex/bio1.grd
dismo/inst/ex/bio12.gri
dismo/inst/ex/bio5.gri
dismo/inst/ex/bio17.grd
dismo/inst/ex/bradypus.csv
dismo/inst/ex/bio8.grd
dismo/inst/ex/bio6.gri
dismo/inst/ex/bio7.gri
dismo/inst/ex/bio6.grd
dismo/inst/ex/bio16.gri
dismo/inst/ex/bio1.gri
dismo/inst/ex/bio5.grd
dismo/inst/ex/bio16.grd
dismo/inst/ex/acaule.csv
dismo/inst/ex/bio8.gri
dismo/inst/ex/bio12.grd
dismo/inst/java
dismo/inst/java/dismo.jar
dismo/inst/doc
dismo/inst/doc/brt.Rnw
dismo/inst/doc/brt.R
dismo/inst/doc/sdm.pdf
dismo/inst/doc/sdm.Rnw
dismo/inst/doc/brt.pdf
dismo/inst/doc/sdm.R
dismo/src
dismo/src/percRank.c
dismo/NAMESPACE
dismo/data
dismo/data/ECOcrops.RData
dismo/data/acaule.RData
dismo/data/Anguilla_test.RData
dismo/data/Anguilla_grids.RData
dismo/data/Anguilla_train.RData
dismo/R
dismo/R/gbif.R dismo/R/reserves.R dismo/R/persp.R dismo/R/errorDetect.R dismo/R/convHull.predict.R dismo/R/bioclim.predict.R dismo/R/pointValues.R dismo/R/gbm.step.R dismo/R/prepareData.R dismo/R/boundRect.R dismo/R/mess.R dismo/R/geoDist.R dismo/R/gbm.perspec.R dismo/R/rectHull.R dismo/R/pointsToMatrix.R dismo/R/check.R dismo/R/onLoad.R dismo/R/evaluate.R dismo/R/convHull.R dismo/R/circles.predict.R dismo/R/pointInPolygon.R dismo/R/pwdSample.R dismo/R/plot.R dismo/R/gbm.interactions.R dismo/R/maxent.R dismo/R/nullRandom.R dismo/R/ecocrop.R dismo/R/threshold.R dismo/R/gbm.holdout.R dismo/R/voronoi.R dismo/R/circleHull.predict.R dismo/R/boxplot.R dismo/R/maxent.predict.R dismo/R/errorReport.R dismo/R/gbm.plot.R dismo/R/voronoiHull.predict.R dismo/R/nicheEquivelancy.R dismo/R/circles.R dismo/R/ssb.R dismo/R/geoIDW.predict.R dismo/R/Mahalanobis.predict.R dismo/R/precision.R dismo/R/estimators.R dismo/R/domain.R dismo/R/hullls.R dismo/R/nicheOverlap.R dismo/R/voronoiHull.R dismo/R/kauc.R dismo/R/gbm.plot.fits.R dismo/R/density.R dismo/R/randomPoints.R dismo/R/domain.predict.R dismo/R/gridSample.R dismo/R/geoDist.predict.R dismo/R/bioclim.R dismo/R/kfold.R dismo/R/bioclim.plot.R dismo/R/gbif_old.R dismo/R/dcEvaluate.R dismo/R/diversity.R dismo/R/gbm.simplify.R dismo/R/gbm.utils.R dismo/R/rectHull.predict.R dismo/R/calc.deviance.R dismo/R/biogeomancer.R dismo/R/geoIDW.R dismo/R/gmap.R dismo/R/geocode.R dismo/R/plotEval.R dismo/R/biovars.R dismo/R/AAAclasses.R dismo/R/gorilla.R dismo/R/ecolim.R dismo/R/gbm.fixed.R dismo/R/Mahalanobis.R dismo/R/mercator.R dismo/R/circleHull.R dismo/R/response.R dismo/R/pairs.R
dismo/vignettes
dismo/vignettes/brt.Rnw
dismo/vignettes/sdm.Rnw
dismo/MD5
dismo/java
dismo/java/mebridge.java
dismo/build
dismo/build/vignette.rds
dismo/DESCRIPTION
dismo/ChangeLog
dismo/man
dismo/man/ssb.Rd dismo/man/geocode.Rd dismo/man/gbm.simplify.Rd dismo/man/threshold.Rd dismo/man/bioclim.Rd dismo/man/nicheEquivalency.Rd dismo/man/kfold.Rd dismo/man/gbif.Rd dismo/man/ModelEvaluation.Rd dismo/man/geoDist.Rd dismo/man/gbm.plot.Rd dismo/man/calc.deviance.Rd dismo/man/evaluate.Rd dismo/man/mess.Rd dismo/man/gbm.data.Rd dismo/man/maxent.Rd dismo/man/convexHull.Rd dismo/man/randomPoints.Rd dismo/man/voronoi.Rd dismo/man/gridSample.Rd dismo/man/predict.Rd dismo/man/pwdSample.Rd dismo/man/gmap.Rd dismo/man/pointValues.Rd dismo/man/pairs.Rd dismo/man/nullRandom.Rd dismo/man/ecolim.Rd dismo/man/acaule.Rd dismo/man/prepareData.Rd dismo/man/plotEval.Rd dismo/man/nicheOverlap.Rd dismo/man/dismo-package.Rd dismo/man/rectHull.Rd dismo/man/boxplot.Rd dismo/man/DistModel.Rd dismo/man/gbm.step.Rd dismo/man/gbm.interactions.Rd dismo/man/mahal.Rd dismo/man/gbm.persp.Rd dismo/man/ecocrop.Rd dismo/man/dcEvaluate.Rd dismo/man/biovars.Rd dismo/man/circleHull.Rd dismo/man/voronoiHulll.Rd dismo/man/gbm.fixed.Rd dismo/man/circles.Rd dismo/man/geoIDW.Rd dismo/man/plot.Rd dismo/man/response.Rd dismo/man/gbm.plot.fits.Rd dismo/man/evaluateROCR.Rd dismo/man/density.Rd dismo/man/domain.Rd dismo/man/gbm.holdout.Rd

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