dismo: Species Distribution Modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites and the environment at these sites.

Author
Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Date of publication
2016-06-16 05:28:23
Maintainer
Robert J. Hijmans <r.hijmans@gmail.com>
License
GPL (>= 3)
Version
1.1-1

View on CRAN

Man pages

acaule
Solanum acaule data
bioclim
Bioclim
biovars
bioclimatic variables
boxplot
Box plot of model evaluation data
calc.deviance
Calculate deviance
circles
Circles range
convexHull
Convex hull model
dcEvaluate
Evaluate by distance class
density
density
dismo-package
Species distribution modeling
DistModel
Class "DistModel"
domain
Domain
ecocrop
Ecocrop model
ecolim
Ecolim model
evaluate
Model evaluation
evaluateROCR
Model testing with the ROCR package
gbif
Data from GBIF
gbm.data
Anguilla australis distribution data
gbm.fixed
gbm fixed
gbm.holdout
gbm holdout
gbm.interactions
gbm interactions
gbm.persp
gbm perspective plot
gbm.plot
gbm plot
gbm.plot.fits
gbm plot fitted values
gbm.simplify
gbm simplify
gbm.step
gbm step
geocode
Georeferencing with Google
geoDist
Geographic distance model
geoIDW
Inverse-distance weighted model
gmap
Get a Google map
gridSample
Stratified regular sample on a grid
kfold
k-fold partitioning
mahal
Mahalanobis model
maxent
Maxent
mess
Multivariate environmental similarity surfaces (MESS)
ModelEvaluation
Class "ModelEvaluation"
nicheEquivalency
Niche equivalency
nicheOverlap
Niche overlap
nullRandom
Random null model
pairs
Pair plots
plot
Plot predictor values
plotEval
Plot model evaluation data
pointValues
point values
predict
Distribution model predictions
prepareData
Prepare data for model fitting
pwdSample
Pair-wise distance sampling
randomPoints
Random points
rectHull
Rectangular hull model
response
response plots
ssb
Spatial sorting bias
threshold
Find a threshold
voronoi
Voronoi polygons
voronoiHulll
Voronoi hull model

Files in this package

dismo
dismo/inst
dismo/inst/ex
dismo/inst/ex/bio7.grd
dismo/inst/ex/biome.gri
dismo/inst/ex/biome.grd
dismo/inst/ex/bio17.gri
dismo/inst/ex/bio1.grd
dismo/inst/ex/bio12.gri
dismo/inst/ex/bio5.gri
dismo/inst/ex/bio17.grd
dismo/inst/ex/bradypus.csv
dismo/inst/ex/bio8.grd
dismo/inst/ex/bio6.gri
dismo/inst/ex/bio7.gri
dismo/inst/ex/bio6.grd
dismo/inst/ex/bio16.gri
dismo/inst/ex/bio1.gri
dismo/inst/ex/bio5.grd
dismo/inst/ex/bio16.grd
dismo/inst/ex/acaule.csv
dismo/inst/ex/bio8.gri
dismo/inst/ex/bio12.grd
dismo/inst/java
dismo/inst/java/dismo.jar
dismo/inst/doc
dismo/inst/doc/brt.Rnw
dismo/inst/doc/brt.R
dismo/inst/doc/sdm.pdf
dismo/inst/doc/sdm.Rnw
dismo/inst/doc/brt.pdf
dismo/inst/doc/sdm.R
dismo/src
dismo/src/percRank.c
dismo/NAMESPACE
dismo/data
dismo/data/ECOcrops.RData
dismo/data/acaule.RData
dismo/data/Anguilla_test.RData
dismo/data/Anguilla_grids.RData
dismo/data/Anguilla_train.RData
dismo/R
dismo/R/gbif.R
dismo/R/reserves.R
dismo/R/persp.R
dismo/R/errorDetect.R
dismo/R/convHull.predict.R
dismo/R/bioclim.predict.R
dismo/R/pointValues.R
dismo/R/gbm.step.R
dismo/R/prepareData.R
dismo/R/boundRect.R
dismo/R/mess.R
dismo/R/geoDist.R
dismo/R/gbm.perspec.R
dismo/R/rectHull.R
dismo/R/pointsToMatrix.R
dismo/R/check.R
dismo/R/onLoad.R
dismo/R/evaluate.R
dismo/R/convHull.R
dismo/R/circles.predict.R
dismo/R/pointInPolygon.R
dismo/R/pwdSample.R
dismo/R/plot.R
dismo/R/gbm.interactions.R
dismo/R/maxent.R
dismo/R/nullRandom.R
dismo/R/ecocrop.R
dismo/R/threshold.R
dismo/R/gbm.holdout.R
dismo/R/voronoi.R
dismo/R/boxplot.R
dismo/R/maxent.predict.R
dismo/R/errorReport.R
dismo/R/gbm.plot.R
dismo/R/voronoiHull.predict.R
dismo/R/circularArea.R
dismo/R/nicheEquivelancy.R
dismo/R/circles.R
dismo/R/ssb.R
dismo/R/geoIDW.predict.R
dismo/R/Mahalanobis.predict.R
dismo/R/precision.R
dismo/R/estimators.R
dismo/R/domain.R
dismo/R/hullls.R
dismo/R/nicheOverlap.R
dismo/R/voronoiHull.R
dismo/R/kauc.R
dismo/R/gbm.plot.fits.R
dismo/R/density.R
dismo/R/randomPoints.R
dismo/R/domain.predict.R
dismo/R/gridSample.R
dismo/R/geoDist.predict.R
dismo/R/bioclim.R
dismo/R/kfold.R
dismo/R/bioclim.plot.R
dismo/R/gbif_old.R
dismo/R/dcEvaluate.R
dismo/R/diversity.R
dismo/R/gbm.simplify.R
dismo/R/gbm.utils.R
dismo/R/rectHull.predict.R
dismo/R/calc.deviance.R
dismo/R/biogeomancer.R
dismo/R/geoIDW.R
dismo/R/gmap.R
dismo/R/geocode.R
dismo/R/plotEval.R
dismo/R/biovars.R
dismo/R/AAAclasses.R
dismo/R/gorilla.R
dismo/R/ecolim.R
dismo/R/gbm.fixed.R
dismo/R/Mahalanobis.R
dismo/R/mercator.R
dismo/R/response.R
dismo/R/pairs.R
dismo/vignettes
dismo/vignettes/brt.Rnw
dismo/vignettes/sdm.Rnw
dismo/MD5
dismo/java
dismo/java/mebridge.java
dismo/build
dismo/build/vignette.rds
dismo/DESCRIPTION
dismo/ChangeLog
dismo/man
dismo/man/ssb.Rd
dismo/man/geocode.Rd
dismo/man/gbm.simplify.Rd
dismo/man/threshold.Rd
dismo/man/bioclim.Rd
dismo/man/nicheEquivalency.Rd
dismo/man/kfold.Rd
dismo/man/gbif.Rd
dismo/man/ModelEvaluation.Rd
dismo/man/geoDist.Rd
dismo/man/gbm.plot.Rd
dismo/man/calc.deviance.Rd
dismo/man/evaluate.Rd
dismo/man/mess.Rd
dismo/man/gbm.data.Rd
dismo/man/maxent.Rd
dismo/man/convexHull.Rd
dismo/man/randomPoints.Rd
dismo/man/voronoi.Rd
dismo/man/gridSample.Rd
dismo/man/predict.Rd
dismo/man/pwdSample.Rd
dismo/man/gmap.Rd
dismo/man/pointValues.Rd
dismo/man/pairs.Rd
dismo/man/nullRandom.Rd
dismo/man/ecolim.Rd
dismo/man/acaule.Rd
dismo/man/prepareData.Rd
dismo/man/plotEval.Rd
dismo/man/nicheOverlap.Rd
dismo/man/dismo-package.Rd
dismo/man/rectHull.Rd
dismo/man/boxplot.Rd
dismo/man/DistModel.Rd
dismo/man/gbm.step.Rd
dismo/man/gbm.interactions.Rd
dismo/man/mahal.Rd
dismo/man/gbm.persp.Rd
dismo/man/ecocrop.Rd
dismo/man/dcEvaluate.Rd
dismo/man/biovars.Rd
dismo/man/voronoiHulll.Rd
dismo/man/gbm.fixed.Rd
dismo/man/circles.Rd
dismo/man/geoIDW.Rd
dismo/man/plot.Rd
dismo/man/response.Rd
dismo/man/gbm.plot.fits.Rd
dismo/man/evaluateROCR.Rd
dismo/man/density.Rd
dismo/man/domain.Rd
dismo/man/gbm.holdout.Rd