distory: Distance Between Phylogenetic Histories
Version 1.4.3

Geodesic distance between phylogenetic trees and associated functions.

AuthorJohn Chakerian and Susan Holmes
Date of publication2017-03-21 06:06:57 UTC
MaintainerORPHANED
LicenseBSD
Version1.4.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("distory")

Getting started

Package overview

Popular man pages

bin.multiPhylo: Bin Trees
dist.multiPhylo: Geodesic Distance Between Phylogenetic Trees
distory-package: Distance Between Phylogenetic Histories
gromov.hyperbolicity: Gromov Hyperbolicity Constant
mcmc.target.seq: Find MCMC Target Sequence
phylo.diff: Differences Between Phylogenetic Trees
position.leverage: Position Leverage
See all...

All man pages Function index File listing

Man pages

bethe.tree: Bethe Tree
bin.multiPhylo: Bin Trees
dist.multiPhylo: Geodesic Distance Between Phylogenetic Trees
distory-package: Distance Between Phylogenetic Histories
gromov.hyperbolicity: Gromov Hyperbolicity Constant
mcmc.target.seq: Find MCMC Target Sequence
orthant.boundary.tree: Orthant Boundary Tree
phylo.diff: Differences Between Phylogenetic Trees
position.leverage: Position Leverage

Functions

bethe.tree Man page Source code
bin.multiPhylo Man page Source code
boot.samples.idxs Man page Source code
convert.table.to.idx Man page Source code
dist.multiPhylo Man page Source code
distinct.edges Man page Source code
distory Man page
distory-package Man page
edge.from.split Man page Source code
get.bipartition Man page Source code
gromov.hyperbolicity Man page Source code
lookup.samples Man page Source code
mcmc.target.seq Man page Source code
onUnload Source code
orthant.boundary.tree Man page Source code
partition.leaves Man page Source code
phylo.diff Man page Source code Source code
position.leverage Man page Source code

Files

src
src/phydist_r.cpp
src/newick.cpp
src/treedist-stripped.cpp
src/treedist.h
src/newick.h
src/phylo.h
NAMESPACE
R
R/orthant.boundary.tree.R
R/position.leverage.R
R/mcmc.target.seq.R
R/bin.multiPhylo.R
R/phylo.diff.R
R/dist.multiPhylo.R
R/gromov.hyperbolicity.R
R/bethe.tree.R
R/zzz.R
MD5
DESCRIPTION
man
man/distory-package.Rd
man/position.leverage.Rd
man/bethe.tree.Rd
man/mcmc.target.seq.Rd
man/gromov.hyperbolicity.Rd
man/phylo.diff.Rd
man/dist.multiPhylo.Rd
man/orthant.boundary.tree.Rd
man/bin.multiPhylo.Rd
distory documentation built on May 19, 2017, 8:56 p.m.

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