distory: Distance Between Phylogenetic Histories

Geodesic distance between phylogenetic trees and associated functions.

Author
John Chakerian and Susan Holmes
Date of publication
2013-11-12 10:27:52
Maintainer
Susan Holmes <susan@stat.stanford.edu>
License
BSD
Version
1.4.2

View on CRAN

Man pages

bethe.tree
Bethe Tree
bin.multiPhylo
Bin Trees
dist.multiPhylo
Geodesic Distance Between Phylogenetic Trees
distory-package
Distance Between Phylogenetic Histories
gromov.hyperbolicity
Gromov Hyperbolicity Constant
mcmc.target.seq
Find MCMC Target Sequence
orthant.boundary.tree
Orthant Boundary Tree
phylo.diff
Differences Between Phylogenetic Trees
position.leverage
Position Leverage

Files in this package

distory
distory/src
distory/src/phydist_r.cpp
distory/src/newick.cpp
distory/src/treedist-stripped.cpp
distory/src/treedist.h
distory/src/newick.h
distory/src/phylo.h
distory/NAMESPACE
distory/R
distory/R/orthant.boundary.tree.R
distory/R/position.leverage.R
distory/R/mcmc.target.seq.R
distory/R/bin.multiPhylo.R
distory/R/phylo.diff.R
distory/R/dist.multiPhylo.R
distory/R/gromov.hyperbolicity.R
distory/R/bethe.tree.R
distory/R/zzz.R
distory/MD5
distory/DESCRIPTION
distory/man
distory/man/distory-package.Rd
distory/man/position.leverage.Rd
distory/man/bethe.tree.Rd
distory/man/mcmc.target.seq.Rd
distory/man/gromov.hyperbolicity.Rd
distory/man/phylo.diff.Rd
distory/man/dist.multiPhylo.Rd
distory/man/orthant.boundary.tree.Rd
distory/man/bin.multiPhylo.Rd