| bethe.tree | Bethe Tree | 
| bin.multiPhylo | Bin Trees | 
| dist.multiPhylo | Geodesic Distance Between Phylogenetic Trees | 
| distory-package | Distance Between Phylogenetic Histories | 
| gromov.hyperbolicity | Gromov Hyperbolicity Constant | 
| mcmc.target.seq | Find MCMC Target Sequence | 
| orthant.boundary.tree | Orthant Boundary Tree | 
| phylo.diff | Differences Between Phylogenetic Trees | 
| position.leverage | Position Leverage | 
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