| bethe.tree | Bethe Tree |
| bin.multiPhylo | Bin Trees |
| dist.multiPhylo | Geodesic Distance Between Phylogenetic Trees |
| distory-package | Distance Between Phylogenetic Histories |
| gromov.hyperbolicity | Gromov Hyperbolicity Constant |
| mcmc.target.seq | Find MCMC Target Sequence |
| orthant.boundary.tree | Orthant Boundary Tree |
| phylo.diff | Differences Between Phylogenetic Trees |
| position.leverage | Position Leverage |
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