diveMove: Dive Analysis and Calibration
Version 1.4.3

Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.

Browse man pages Browse package API and functions Browse package files

AuthorSebastian P. Luque <spluque@gmail.com>
Date of publication2017-03-07 00:36:48
MaintainerSebastian P. Luque <spluque@gmail.com>
LicenseGPL-3
Version1.4.3
URL https://github.com/spluque/diveMove
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("diveMove")

Man pages

austFilter: Filter satellite locations
bout-methods: Methods for Plotting and Extracting the Bout Ending Criterion
bout-misc: Fit a Broken Stick Model on Log Frequency Data for...
bouts2MLE: Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2NLS: Fit mixture of 2 Poisson Processes to Log Frequency data
bouts3NLS: Fit mixture of 3 Poisson Processes to Log Frequency data
calibrateDepth: Calibrate Depth and Generate a "TDRcalibrate" object
calibrateSpeed: Calibrate and build a "TDRcalibrate" object
detDive-internal: Detect dives from depth readings
detPhase-internal: Detect phases of activity from depth readings
distSpeed: Calculate distance and speed between locations
diveModel-class: Class "diveModel" for representing a model for identifying...
diveMove-internal: Internal diveMove Functions
diveMove-package: Dive Analysis and Calibration
dives: Sample of TDR data from a fur seal
diveStats: Per-dive statistics
extractDive-methods: Extract Dives from "TDR" or "TDRcalibrate" Objects
labDive-internal: Internal Functions used for Detection of Dives
plotDiveModel-methods: Methods for plotting models of dive phases
plotTDR-methods: Methods for plotting objects of class "TDR" and...
plotZOC-methods: Methods for visually assessing results of ZOC procedure
readLocs: Read comma-delimited file with location data
readTDR: Read comma-delimited file with "TDR" data
rqPlot: Plot of quantile regression for speed calibrations
sealLocs: Ringed and Gray Seal ARGOS Satellite Location Data
TDR-accessors: Coerce, Extractor, and Replacement methods for class "TDR"...
TDRcalibrate-accessors: Methods to Show and Extract Basic Information from...
TDRcalibrate-class: Class "TDRcalibrate" for dive analysis
TDR-class: Classes "TDR" and "TDRspeed" for representing TDR information
timeBudget-methods: Describe the Time Budget of Major Activities from...

Functions

.cutDive Man page
.depthFilter Man page
.derivStats Man page
.detDive Man page
.detPhase Man page
.diveIndices Man page
.getInterval Man page
.labDive Man page
.labDivePhase Man page
.night Man page
.plotTDR Man page
.plotZOCfilters Man page
.plotZOCtdrs Man page
.rleActivity Man page
.speedCol Man page
.speedNames Man page
.speedStats Man page
.zoc Man page
TDR Man page
TDR-accessors Man page
TDR-class Man page
TDR-methods Man page
TDRcalibrate Man page
TDRcalibrate-accessors Man page
TDRcalibrate-class Man page
TDRcalibrate-methods Man page
TDRspeed Man page
TDRspeed-class Man page
[,TDR,numeric,missing,missing-method Man page
as.TDRspeed Man page
as.TDRspeed,TDR-method Man page
as.data.frame,TDR-method Man page
austFilter Man page
bec2 Man page
bec2,mle-method Man page
bec2,nls-method Man page
bec3 Man page
bec3,nls-method Man page
bout-methods Man page
boutfreqs Man page
boutinit Man page
bouts.mle Man page
bouts2.LL Man page
bouts2.ll Man page
bouts2.mleBEC Man page
bouts2.mleFUN Man page
bouts2.nls Man page
bouts2.nlsBEC Man page
bouts2.nlsFUN Man page
bouts3.nls Man page
bouts3.nlsBEC Man page
bouts3.nlsFUN Man page
calibrateDepth Man page
calibrateSpeed Man page
ccData<- Man page
ccData<-,TDR,data.frame-method Man page
coerce,TDR,TDRspeed-method Man page
coerce,TDR,data.frame-method Man page
createTDR Man page
depth<- Man page
depth<-,TDR,numeric-method Man page
detDive-internal Man page
detPhase-internal Man page
distSpeed Man page
diveModel Man page
diveModel-class Man page
diveMove Man page
diveMove-package Man page
diveStats Man page
dives Man page
divesTDR Man page
extractDive Man page
extractDive,TDR,numeric,numeric-method Man page
extractDive,TDRcalibrate,numeric,missing-method Man page
extractDive-methods Man page
getCCData Man page
getCCData,TDR,character-method Man page
getCCData,TDR,missing-method Man page
getDAct Man page
getDAct,TDRcalibrate,character-method Man page
getDAct,TDRcalibrate,missing-method Man page
getDPhaseLab Man page
getDPhaseLab,TDRcalibrate,missing-method Man page
getDPhaseLab,TDRcalibrate,numeric-method Man page
getDepth Man page
getDepth,TDR-method Man page
getDiveDeriv Man page
getDiveDeriv,TDRcalibrate-method Man page
getDiveDeriv,diveModel-method Man page
getDiveModel Man page
getDiveModel,TDRcalibrate,missing-method Man page
getDiveModel,TDRcalibrate,numeric-method Man page
getDtime Man page
getDtime,TDR-method Man page
getFileName Man page
getFileName,TDR-method Man page
getGAct Man page
getGAct,TDRcalibrate,character-method Man page
getGAct,TDRcalibrate,missing-method Man page
getSpeed Man page
getSpeed,TDRspeed-method Man page
getSpeedCoef Man page
getSpeedCoef,TDRcalibrate-method Man page
getTDR Man page
getTDR,TDRcalibrate-method Man page
getTime Man page
getTime,TDR-method Man page
grpSpeedFilter Man page
labDive-internal Man page
labelBouts Man page
logit Man page
oneDiveStats Man page
plotBouts Man page
plotBouts,mle-method Man page
plotBouts,nls-method Man page
plotBouts2.cdf Man page
plotBouts2.mle Man page
plotBouts2.nls Man page
plotBouts3.nls Man page
plotDiveModel Man page
plotDiveModel,TDRcalibrate,missing-method Man page
plotDiveModel,diveModel,missing-method Man page
plotDiveModel,numeric,numeric-method Man page
plotDiveModel-methods Man page
plotTDR Man page
plotTDR,POSIXt,numeric-method Man page
plotTDR,TDR,missing-method Man page
plotTDR,TDRcalibrate,missing-method Man page
plotTDR-methods Man page
plotZOC Man page
plotZOC,TDR,TDRcalibrate-method Man page
plotZOC,TDR,matrix-method Man page
plotZOC-methods Man page
readLocs Man page
readTDR Man page
rmsDistFilter Man page
rqPlot Man page
sealLocs Man page
show,TDR-method Man page
show,TDRcalibrate-method Man page
show,diveModel-method Man page
speed<- Man page
speed<-,TDRspeed,numeric-method Man page
stampDive Man page
timeBudget Man page
timeBudget,TDRcalibrate,logical-method Man page
unLogit Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/diveMove.Rnw
inst/doc/diveMove.R
inst/doc/diveMove.pdf
tests
tests/class-tests.R
tests/calibrations.R
tests/final-stats.R
NAMESPACE
NEWS
data
data/dives.csv
data/sealLocs.csv
data/divesTDR.RData
R
R/AllGenerics.R
R/bouts.R
R/plotTDR.R
R/readLocs.R
R/AllClass.R
R/diveStats.R
R/AllMethod.R
R/calibrate.R
R/austFilter.R
R/stampDive.R
R/zoc.R
R/oneDiveStats.R
R/distSpeed.R
R/plotZOC.R
R/readTDR.R
R/detDive.R
R/speedStats.R
R/zzz.R
R/detPhase.R
vignettes
vignettes/Makefile
vignettes/diveMove.Rnw
vignettes/biblioSPL.bib
vignettes/tcltk.png
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/sealLocs.Rd
man/detDive-internal.Rd
man/bouts2NLS.Rd
man/bout-misc.Rd
man/detPhase-internal.Rd
man/bouts3NLS.Rd
man/plotTDR-methods.Rd
man/diveStats.Rd
man/plotDiveModel-methods.Rd
man/readTDR.Rd
man/distSpeed.Rd
man/diveMove-package.Rd
man/labDive-internal.Rd
man/austFilter.Rd
man/calibrateDepth.Rd
man/dives.Rd
man/diveModel-class.Rd
man/bout-methods.Rd
man/diveMove-internal.Rd
man/TDR-class.Rd
man/bouts2MLE.Rd
man/timeBudget-methods.Rd
man/TDRcalibrate-class.Rd
man/plotZOC-methods.Rd
man/rqPlot.Rd
man/readLocs.Rd
man/TDRcalibrate-accessors.Rd
man/extractDive-methods.Rd
man/calibrateSpeed.Rd
man/TDR-accessors.Rd
.Rinstignore
diveMove documentation built on May 19, 2017, 2:01 p.m.