dkDNA: Diffusion Kernels on a Set of Genotypes

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Compute diffusion kernels on DNA polymorphisms, including SNP and bi-allelic genotypes.

Author
Gota Morota and Masanori Koyama
Date of publication
2015-06-01 01:05:22
Maintainer
Gota Morota <morota@unl.edu>
License
GPL-2
Version
0.1.1
URLs

View on CRAN

Man pages

dkDNA-package
Diffusion kernels on a set of genotypes
hypercube
Diffusion kernels on bi-allelic genotypes
snpgrid
Diffusion kernels on SNP genotypes
snphamming
Diffusion kernels on SNP genotypes

Files in this package

dkDNA
dkDNA/src
dkDNA/src/snpgrid.f90
dkDNA/src/snphamming.f90
dkDNA/src/hypercube.f90
dkDNA/NAMESPACE
dkDNA/CHANGELOG
dkDNA/R
dkDNA/R/snpgrid.R
dkDNA/R/snphamming.R
dkDNA/R/hypercube.R
dkDNA/R/zzz.R
dkDNA/MD5
dkDNA/DESCRIPTION
dkDNA/man
dkDNA/man/hypercube.Rd
dkDNA/man/dkDNA-package.Rd
dkDNA/man/snpgrid.Rd
dkDNA/man/snphamming.Rd