dlmap: Detection Localization Mapping for QTL
Version 1.13

QTL mapping in a mixed model framework with separate detection and localization stages. The first stage detects the number of QTL on each chromosome based on the genetic variation due to grouped markers on the chromosome; the second stage uses this information to determine the most likely QTL positions. The mixed model can accommodate general fixed and random effects, including spatial effects in field trials and pedigree effects. Applicable to backcrosses, doubled haploids, recombinant inbred lines, F2 intercrosses, and association mapping populations.

Browse man pages Browse package API and functions Browse package files

AuthorEmma Huang and Andrew George
Date of publication2012-08-09 05:48:27
MaintainerEmma Huang <Emma.Huang@csiro.au>
LicenseGPL-2
Version1.13
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dlmap")

Man pages

BSdat: Simulated data for a backcross
BSphe: Simulated phenotypic data
data.access: Data summaries of dlcross and dlmap objects
dlcross: Constructor, summary and plotting functions for dlcross...
dlmap: Perform DLMapping
dlmap-internal: Internal dlmap functions
dlmap-package: DLMapping for QTL detection

Functions

BSdat Man page
BSphe Man page
calc.genoprob2 Man page Source code
calcpos Man page
cintern Man page Source code
dlcross Man page
dlcross.cross Man page
dlcross.dlmap Man page
dlcross.other Man page
dldetect Man page
dllocalize Man page
dlmap Man page
dlmap-package Man page
dlmap-pkg Man page
dlmapdet Man page
dlmaploc Man page
dltest Man page
ngen Man page Source code
ngen.dlcross Man page Source code
ngen.dlmap Man page Source code
nmrk Man page Source code
nmrk.dlcross Man page Source code
nmrk.dlmap Man page Source code
nphen Man page Source code
nphen.dlcross Man page Source code
nphen.dlmap Man page Source code
plot.dlcross Man page
plot.dlmap Man page
profileplot Man page Source code
profileplot.dlmap Man page
summary.dlcross Man page
summary.dlmap Man page
waldtest Source code
waldtest.asreml Man page Source code

Files

MD5
R
R/waldtest.R
R/waldtest.asreml.R
R/summary.dlmap.R
R/summary.dlcross.R
R/qchibar.R
R/pvfx.R
R/profileplot.R
R/profileplot.dlmap.R
R/print.dlmap.R
R/print.dlcross.R
R/plot.dlmap.R
R/plot.dlcross.R
R/nphen.R
R/nphen.dlmap.R
R/nphen.dlcross.R
R/nmrk.R
R/nmrk.dlmap.R
R/nmrk.dlcross.R
R/ngen.R
R/ngen.dlmap.R
R/ngen.dlcross.R
R/dltest.R
R/dlmaploc.R
R/dlmapdet.R
R/dlmap.R
R/dllocalize.R
R/dldetect.R
R/dlcross.R
R/dlcross.other.R
R/dlcross.dlmap.R
R/dlcross.cross.R
R/cintern.R
R/calcpos.R
R/calc.genoprob2.R
NEWS
NAMESPACE
man
man/dlmap.Rd
man/dlmap-package.Rd
man/dlmap-internal.Rd
man/dlcross.Rd
man/data.access.Rd
man/BSphe.Rd
man/BSdat.Rd
inst
inst/CITATION
DESCRIPTION
data
data/BSphe.rda
data/BSdat.rda
dlmap documentation built on May 19, 2017, 1:50 p.m.