QTL mapping in a mixed model framework with separate detection and localization stages. The first stage detects the number of QTL on each chromosome based on the genetic variation due to grouped markers on the chromosome; the second stage uses this information to determine the most likely QTL positions. The mixed model can accommodate general fixed and random effects, including spatial effects in field trials and pedigree effects. Applicable to backcrosses, doubled haploids, recombinant inbred lines, F2 intercrosses, and association mapping populations.
|Author||Emma Huang and Andrew George|
|Date of publication||2012-08-09 05:48:27|
|Maintainer||Emma Huang <Emma.Huang@csiro.au>|
BSdat: Simulated data for a backcross
BSphe: Simulated phenotypic data
data.access: Data summaries of dlcross and dlmap objects
dlcross: Constructor, summary and plotting functions for dlcross...
dlmap: Perform DLMapping
dlmap-internal: Internal dlmap functions
dlmap-package: DLMapping for QTL detection