dlmap: Detection Localization Mapping for QTL

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QTL mapping in a mixed model framework with separate detection and localization stages. The first stage detects the number of QTL on each chromosome based on the genetic variation due to grouped markers on the chromosome; the second stage uses this information to determine the most likely QTL positions. The mixed model can accommodate general fixed and random effects, including spatial effects in field trials and pedigree effects. Applicable to backcrosses, doubled haploids, recombinant inbred lines, F2 intercrosses, and association mapping populations.

Author
Emma Huang and Andrew George
Date of publication
2012-08-09 05:48:27
Maintainer
Emma Huang <Emma.Huang@csiro.au>
License
GPL-2
Version
1.13

View on CRAN

Man pages

BSdat
Simulated data for a backcross
BSphe
Simulated phenotypic data
data.access
Data summaries of dlcross and dlmap objects
dlcross
Constructor, summary and plotting functions for dlcross...
dlmap
Perform DLMapping
dlmap-internal
Internal dlmap functions
dlmap-package
DLMapping for QTL detection

Files in this package

dlmap
dlmap/MD5
dlmap/R
dlmap/R/waldtest.R
dlmap/R/waldtest.asreml.R
dlmap/R/summary.dlmap.R
dlmap/R/summary.dlcross.R
dlmap/R/qchibar.R
dlmap/R/pvfx.R
dlmap/R/profileplot.R
dlmap/R/profileplot.dlmap.R
dlmap/R/print.dlmap.R
dlmap/R/print.dlcross.R
dlmap/R/plot.dlmap.R
dlmap/R/plot.dlcross.R
dlmap/R/nphen.R
dlmap/R/nphen.dlmap.R
dlmap/R/nphen.dlcross.R
dlmap/R/nmrk.R
dlmap/R/nmrk.dlmap.R
dlmap/R/nmrk.dlcross.R
dlmap/R/ngen.R
dlmap/R/ngen.dlmap.R
dlmap/R/ngen.dlcross.R
dlmap/R/dltest.R
dlmap/R/dlmaploc.R
dlmap/R/dlmapdet.R
dlmap/R/dlmap.R
dlmap/R/dllocalize.R
dlmap/R/dldetect.R
dlmap/R/dlcross.R
dlmap/R/dlcross.other.R
dlmap/R/dlcross.dlmap.R
dlmap/R/dlcross.cross.R
dlmap/R/cintern.R
dlmap/R/calcpos.R
dlmap/R/calc.genoprob2.R
dlmap/NEWS
dlmap/NAMESPACE
dlmap/man
dlmap/man/dlmap.Rd
dlmap/man/dlmap-package.Rd
dlmap/man/dlmap-internal.Rd
dlmap/man/dlcross.Rd
dlmap/man/data.access.Rd
dlmap/man/BSphe.Rd
dlmap/man/BSdat.Rd
dlmap/inst
dlmap/inst/CITATION
dlmap/DESCRIPTION
dlmap/data
dlmap/data/BSphe.rda
dlmap/data/BSdat.rda