downscale: Downscaling Species Occupancy

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A set of functions that downscales species occupancy at coarse grain sizes to predict species occupancy at fine grain sizes.

Author
Charles Marsh [aut, cre]
Date of publication
2016-11-25 08:42:56
Maintainer
Charles Marsh <charliem2003@gmail.com>
License
GPL-2
Version
1.2-4

View on CRAN

Man pages

downscale
Model area of occupancy against grain size for downscaling
Downscale-package
Downscaling Species Occupancy
ensemble.downscale
Ensemble modelling of multiple downscaling functions
hui.downscale
Predict occupancy at fine grain sizes using the Hui model
plot.predict.downscale
Plotting of downscaled occupancy at fine grain sizes
predict.downscale
Predict occupancy at fine grain sizes
upgrain
Upgraining of atlas data to larger grain sizes
upgrain.threshold
Exploration of trade-offs in threshold selection for...

Files in this package

downscale
downscale/inst
downscale/inst/extdata
downscale/inst/extdata/UK.cpg
downscale/inst/extdata/UK.shp
downscale/inst/extdata/atlas_data.txt
downscale/inst/extdata/UK.shx
downscale/inst/extdata/UK.prj
downscale/inst/extdata/UK.sbx
downscale/inst/extdata/UK.sbn
downscale/inst/extdata/UK.dbf
downscale/inst/doc
downscale/inst/doc/Downscaling.Rnw
downscale/inst/doc/Downscaling.R
downscale/inst/doc/Upgraining.Rnw
downscale/inst/doc/Downscaling.pdf
downscale/inst/doc/Upgraining.pdf
downscale/inst/doc/Upgraining.R
downscale/NAMESPACE
downscale/NEWS
downscale/R
downscale/R/OptimiseParametersFNB.R
downscale/R/ResidFunctions.R
downscale/R/HuiFunctions.R
downscale/R/ThomasFunctions.R
downscale/R/OptimiseParametersGNB.R
downscale/R/ensemble.downscale.R
downscale/R/OptimiseParametersLogis.R
downscale/R/upgrain.threshold.R
downscale/R/downscale.R
downscale/R/OptimiseParameters.R
downscale/R/OptimiseParametersThomas.R
downscale/R/StartingParams.R
downscale/R/upgrain.R
downscale/R/predict.downscale.R
downscale/R/hui.downscale.R
downscale/R/DataInput.R
downscale/R/PredictFunctions.R
downscale/R/plot.predict.downscale.R
downscale/vignettes
downscale/vignettes/Downscaling-downscale13.pdf
downscale/vignettes/figures
downscale/vignettes/figures/Threshold_maps_2_scales.png
downscale/vignettes/figures/Original_upgrain.png
downscale/vignettes/figures/Threshold_maps.png
downscale/vignettes/figures/All_interior.png
downscale/vignettes/figures/Thumbs.db
downscale/vignettes/figures/Threshold_plots.png
downscale/vignettes/figures/Flow.png
downscale/vignettes/figures/Saturation.png
downscale/vignettes/figures/Threshold_maps_4_scales.png
downscale/vignettes/figures/Interior_only.png
downscale/vignettes/Upgraining-upgrain.downscale.png
downscale/vignettes/Downscaling-downscale36.png
downscale/vignettes/Downscaling-downscale19.pdf
downscale/vignettes/Downscaling-downscale32.png
downscale/vignettes/Downscaling.Rnw
downscale/vignettes/Upgraining-upgrain.downscale.pdf
downscale/vignettes/Downscaling-downscale6.pdf
downscale/vignettes/Downscaling-downscale33.png
downscale/vignettes/Downscaling-downscale42.png
downscale/vignettes/Downscaling-downscale23.png
downscale/vignettes/Downscaling-downscale34.png
downscale/vignettes/Downscaling-downscale38.png
downscale/vignettes/Downscaling-downscale26.png
downscale/vignettes/Downscaling-downscale16.png
downscale/vignettes/Downscaling-downscale22.pdf
downscale/vignettes/Thumbs.db
downscale/vignettes/Downscaling-downscale11.png
downscale/vignettes/Upgraining.Rnw
downscale/vignettes/Downscaling-downscale.pdf
downscale/vignettes/Downscaling-downscale30.png
downscale/vignettes/Downscaling-downscale18.pdf
downscale/vignettes/Downscaling-downscale.png
downscale/vignettes/Downscaling-downscale14.png
downscale/vignettes/Downscaling-downscale41.png
downscale/vignettes/Downscaling-upgrain.downscale.pdf
downscale/vignettes/Downscaling-downscale16.pdf
downscale/vignettes/Downscaling-upgrain.downscale.png
downscale/vignettes/Downscaling-downscale18.png
downscale/vignettes/Downscaling-downscale26.pdf
downscale/vignettes/Downscaling-downscale24.png
downscale/vignettes/Downscaling-downscale24.pdf
downscale/vignettes/Downscaling-downscale6.png
downscale/vignettes/Downscaling-downscale11.pdf
downscale/vignettes/Downscaling-downscale40.png
downscale/vignettes/Downscaling-downscale23.pdf
downscale/vignettes/Downscaling-downscale22.png
downscale/vignettes/Downscaling-downscale19.png
downscale/vignettes/Downscaling-downscale14.pdf
downscale/MD5
downscale/build
downscale/build/vignette.rds
downscale/DESCRIPTION
downscale/man
downscale/man/figures
downscale/man/figures/Original.png
downscale/man/figures/Equations.png
downscale/man/figures/Maps.png
downscale/man/figures/Thumbs.db
downscale/man/figures/Flow.png
downscale/man/figures/Params.png
downscale/man/figures/Threshold.png
downscale/man/upgrain.threshold.Rd
downscale/man/plot.predict.downscale.Rd
downscale/man/ensemble.downscale.Rd
downscale/man/hui.downscale.Rd
downscale/man/upgrain.Rd
downscale/man/Downscale-package.Rd
downscale/man/downscale.Rd
downscale/man/predict.downscale.Rd