API for dreamer
Dose Response Models for Bayesian Model Averaging

Global functions
add_adjustment Source code
add_attributes Source code
add_cols Source code
add_efficacious Source code
add_link_attr Source code
add_long_hyperparms Source code
add_mcmc_attributes Source code
add_mcmc_attributes.default Source code
add_mcmc_attributes.dreamer_beta Source code
add_mcmc_attributes.dreamer_beta_binary Source code
add_mcmc_attributes.dreamer_binary Source code
add_mcmc_class Source code
add_mcmc_class.dreamer_beta Source code
add_mcmc_class.dreamer_beta_binary Source code
add_mcmc_class.dreamer_emax Source code
add_mcmc_class.dreamer_emax_binary Source code
add_mcmc_class.dreamer_exp Source code
add_mcmc_class.dreamer_exp_binary Source code
add_mcmc_class.dreamer_independent_binary Source code
add_mcmc_class.dreamer_independent_continuous Source code
add_mcmc_class.dreamer_linear Source code
add_mcmc_class.dreamer_linear_binary Source code
add_mcmc_class.dreamer_loglinear Source code
add_mcmc_class.dreamer_loglinear_binary Source code
add_mcmc_class.dreamer_logquad Source code
add_mcmc_class.dreamer_logquad_binary Source code
add_mcmc_class.dreamer_quad Source code
add_mcmc_class.dreamer_quad_binary Source code
add_model_name Source code
add_model_name_attr Source code
add_reference_dose Source code
add_time_to_title Source code
aggregate_binary Source code
aggregate_data Source code
any_independent Source code
any_independent.default Source code
any_independent.dreamer_bma Source code
assert_binary_dots Source code
assert_data_reference_dose Source code
assert_dose_len Source code
assert_doses Source code
assert_dreamer_dots Source code
assert_independent_dots Source code
assert_names Source code
assert_no_dots Source code
assert_reference_dose Source code
assert_w_prior Source code
bar_width Source code
base_dreamer_plot Source code
base_dreamer_plot_error_bar Source code
base_dreamer_predictive_plot Source code
calc_post_medx_samps Source code
check_aggregate Source code
check_binary Source code
check_bounds Source code
check_colnames Source code
check_data Source code
check_dose_index Source code
check_dose_length Source code
check_doses_data Source code
check_duplicate_dose Source code
check_ind_model_parms Source code
check_independent_doses Source code
check_independent_model Source code
check_len Source code
check_link Source code
check_longitudinal Source code
check_names Source code
check_no_dots Source code
check_plot Source code
check_seed_len Source code
check_small_bound Source code
check_small_bound2 Source code
check_time Source code
check_times Source code
common_attributes Source code
convergence_warnings Source code
create_jags_model Source code
diagnostics Man page Source code
diagnostics.dreamer Source code
diagnostics.dreamer_bma Source code
do_call Source code
dreamer_data Man page
dreamer_data_beta Man page Source code
dreamer_data_beta_binary Man page Source code
dreamer_data_emax Man page Source code
dreamer_data_emax_binary Man page Source code
dreamer_data_exp Man page Source code
dreamer_data_exp_binary Man page Source code
dreamer_data_independent Man page Source code
dreamer_data_independent_binary Man page Source code
dreamer_data_linear Man page Source code
dreamer_data_linear_binary Man page Source code
dreamer_data_loglinear Man page Source code
dreamer_data_loglinear_binary Man page Source code
dreamer_data_logquad Man page Source code
dreamer_data_logquad_binary Man page Source code
dreamer_data_quad Man page Source code
dreamer_data_quad_binary Man page Source code
dreamer_mcmc Man page Source code
dreamer_mean Source code
dreamer_mean.dreamer_mcmc_beta Source code
dreamer_mean.dreamer_mcmc_beta_binary Source code
dreamer_mean.dreamer_mcmc_emax Source code
dreamer_mean.dreamer_mcmc_emax_binary Source code
dreamer_mean.dreamer_mcmc_exp Source code
dreamer_mean.dreamer_mcmc_exp_binary Source code
dreamer_mean.dreamer_mcmc_independent Source code
dreamer_mean.dreamer_mcmc_independent_binary Source code
dreamer_mean.dreamer_mcmc_linear Source code
dreamer_mean.dreamer_mcmc_linear_binary Source code
dreamer_mean.dreamer_mcmc_loglinear Source code
dreamer_mean.dreamer_mcmc_loglinear_binary Source code
dreamer_mean.dreamer_mcmc_logquad Source code
dreamer_mean.dreamer_mcmc_logquad_binary Source code
dreamer_mean.dreamer_mcmc_quad Source code
dreamer_mean.dreamer_mcmc_quad_binary Source code
dreamer_mean_beta Source code
dreamer_mean_emax Source code
dreamer_mean_exp Source code
dreamer_mean_independent Source code
dreamer_mean_linear Source code
dreamer_mean_loglinear Source code
dreamer_mean_logquad Source code
dreamer_mean_longitudinal_mcmc Source code
dreamer_mean_quad Source code
dreamer_plot_prior Man page Source code
dreamer_post_weights Source code
dreamerplot Man page
epll Source code
expand_jags_rng Source code
expand_mean_time Source code
fit_model Source code
get_args Source code
get_base_data Source code
get_data Source code
get_default_jags_rng Source code
get_dose Source code
get_dose.dreamer_mcmc_beta Source code
get_dose.dreamer_mcmc_beta_binary Source code
get_dose.dreamer_mcmc_emax Source code
get_dose.dreamer_mcmc_emax_binary Source code
get_dose.dreamer_mcmc_exp Source code
get_dose.dreamer_mcmc_exp_binary Source code
get_dose.dreamer_mcmc_linear Source code
get_dose.dreamer_mcmc_linear_binary Source code
get_dose.dreamer_mcmc_loglinear Source code
get_dose.dreamer_mcmc_loglinear_binary Source code
get_dose.dreamer_mcmc_logquad Source code
get_dose.dreamer_mcmc_logquad_binary Source code
get_dose.dreamer_mcmc_quad Source code
get_dose.dreamer_mcmc_quad_binary Source code
get_doses Source code
get_eoi_grid Source code
get_epll Source code
get_extreme Source code
get_extreme.default Source code
get_extreme.dreamer_mcmc_beta Source code
get_extreme.dreamer_mcmc_independent Source code
get_extreme.dreamer_mcmc_logquad Source code
get_extreme.dreamer_mcmc_quad Source code
get_extreme_monotonic Source code
get_inequality_func Source code
get_jags_code Source code
get_jags_data Source code
get_jags_data_hyperparms Source code
get_jags_data_hyperparms.default Source code
get_jags_data_hyperparms.dreamer_independent Source code
get_jags_like_file Source code
get_jags_like_file.dreamer_beta Source code
get_jags_like_file.dreamer_beta_binary Source code
get_jags_like_file.dreamer_emax Source code
get_jags_like_file.dreamer_emax_binary Source code
get_jags_like_file.dreamer_exp Source code
get_jags_like_file.dreamer_exp_binary Source code
get_jags_like_file.dreamer_independent_binary Source code
get_jags_like_file.dreamer_independent_continuous Source code
get_jags_like_file.dreamer_linear Source code
get_jags_like_file.dreamer_linear_binary Source code
get_jags_like_file.dreamer_loglinear Source code
get_jags_like_file.dreamer_loglinear_binary Source code
get_jags_like_file.dreamer_logquad Source code
get_jags_like_file.dreamer_logquad_binary Source code
get_jags_like_file.dreamer_quad Source code
get_jags_like_file.dreamer_quad_binary Source code
get_jags_model Source code
get_jags_prior_file Source code
get_jags_prior_file.dreamer_beta Source code
get_jags_prior_file.dreamer_beta_binary Source code
get_jags_prior_file.dreamer_emax Source code
get_jags_prior_file.dreamer_emax_binary Source code
get_jags_prior_file.dreamer_exp Source code
get_jags_prior_file.dreamer_exp_binary Source code
get_jags_prior_file.dreamer_independent_binary Source code
get_jags_prior_file.dreamer_independent_continuous Source code
get_jags_prior_file.dreamer_linear Source code
get_jags_prior_file.dreamer_linear_binary Source code
get_jags_prior_file.dreamer_loglinear Source code
get_jags_prior_file.dreamer_loglinear_binary Source code
get_jags_prior_file.dreamer_logquad Source code
get_jags_prior_file.dreamer_logquad_binary Source code
get_jags_prior_file.dreamer_quad Source code
get_jags_prior_file.dreamer_quad_binary Source code
get_jags_seed Source code
get_long_model Source code
get_long_prior Source code
get_longitudinal_likelihood_file Source code
get_longitudinal_likelihood_file.dreamer_longitudinal_idp Source code
get_longitudinal_likelihood_file.dreamer_longitudinal_itp Source code
get_longitudinal_likelihood_file.dreamer_longitudinal_linear Source code
get_longitudinal_prior_file Source code
get_longitudinal_prior_file.dreamer_longitudinal_idp Source code
get_longitudinal_prior_file.dreamer_longitudinal_itp Source code
get_longitudinal_prior_file.dreamer_longitudinal_linear Source code
get_longitudinal_vnames Source code
get_longitudinal_vnames.default Source code
get_longitudinal_vnames.dreamer_longitudinal_idp Source code
get_longitudinal_vnames.dreamer_longitudinal_itp Source code
get_longitudinal_vnames.dreamer_longitudinal_linear Source code
get_mcmc_index Source code
get_med Source code
get_min_dose Source code
get_min_na Source code
get_model_index Source code
get_n_params Source code
get_n_params.dreamer_mcmc_beta Source code
get_n_params.dreamer_mcmc_beta_binary Source code
get_n_params.dreamer_mcmc_emax Source code
get_n_params.dreamer_mcmc_emax_binary Source code
get_n_params.dreamer_mcmc_exp Source code
get_n_params.dreamer_mcmc_exp_binary Source code
get_n_params.dreamer_mcmc_independent Source code
get_n_params.dreamer_mcmc_independent_binary Source code
get_n_params.dreamer_mcmc_linear Source code
get_n_params.dreamer_mcmc_linear_binary Source code
get_n_params.dreamer_mcmc_loglinear Source code
get_n_params.dreamer_mcmc_loglinear_binary Source code
get_n_params.dreamer_mcmc_logquad Source code
get_n_params.dreamer_mcmc_logquad_binary Source code
get_n_params.dreamer_mcmc_quad Source code
get_n_params.dreamer_mcmc_quad_binary Source code
get_n_params_longitudinal Source code
get_post_mean_samps Source code
get_progress_bar Source code
get_scale Source code
get_sum_log_probs Source code
get_time Source code
get_time_var Source code
get_title Source code
get_title_error_bars Source code
get_vnames Source code
get_vnames_model Source code
get_vnames_model.dreamer_beta Source code
get_vnames_model.dreamer_beta_binary Source code
get_vnames_model.dreamer_emax Source code
get_vnames_model.dreamer_emax_binary Source code
get_vnames_model.dreamer_exp Source code
get_vnames_model.dreamer_exp_binary Source code
get_vnames_model.dreamer_independent_binary Source code
get_vnames_model.dreamer_independent_continuous Source code
get_vnames_model.dreamer_linear Source code
get_vnames_model.dreamer_linear_binary Source code
get_vnames_model.dreamer_loglinear Source code
get_vnames_model.dreamer_loglinear_binary Source code
get_vnames_model.dreamer_logquad Source code
get_vnames_model.dreamer_logquad_binary Source code
get_vnames_model.dreamer_quad Source code
get_vnames_model.dreamer_quad_binary Source code
get_w_prior Source code
get_y Source code
ilogit Source code
iprobit Source code
logit Source code
make_predictive_binary Source code
make_predictive_continuous Source code
make_reference_dose Source code
mcmc_end_msg Source code
mcmc_start_msg Source code
model Man page
model_beta Man page Source code
model_beta_binary Man page Source code
model_emax Man page Source code
model_emax_binary Man page Source code
model_exp Man page Source code
model_exp_binary Man page Source code
model_independent Man page Source code
model_independent_binary Man page Source code
model_linear Man page Source code
model_linear_binary Man page Source code
model_loglinear Man page Source code
model_loglinear_binary Man page Source code
model_logquad Man page Source code
model_logquad_binary Man page Source code
model_longitudinal Man page
model_longitudinal_idp Man page Source code
model_longitudinal_itp Man page Source code
model_longitudinal_linear Man page Source code
model_quad Man page Source code
model_quad_binary Man page Source code
name_models Source code
new_min Source code
pextreme Source code
plot.dreamer Man page Source code
plot.dreamer_bma Man page Source code
plot_comparison Man page Source code
plot_comparison.default Man page Source code
plot_comparison.dreamer_bma Man page Source code
plot_comparison_worker Source code
plot_data Source code
plot_longitudinal Source code
plot_trace Man page Source code
plot_trace.dreamer Source code
plot_trace.dreamer_bma Source code
post_medx Man page Source code
post_medx.dreamer Man page Source code
post_medx.dreamer_bma Man page Source code
post_medx.dreamer_mcmc_independent Source code
post_medx.dreamer_mcmc_independent_binary Source code
post_perc_effect Man page Source code
post_perc_effect.dreamer Man page Source code
post_perc_effect.dreamer_bma Man page Source code
post_weights Source code
posterior Man page Source code
posterior.default Source code
posterior.dreamer Man page Source code
posterior.dreamer_bma Man page Source code
posterior.dreamer_mcmc_independent Man page Source code
pr_eoi Man page Source code
pr_eoi_impl Source code
pr_med Man page Source code
pr_medx Man page Source code
prep_binary_jags_data Source code
prep_cont_jags_data Source code
prep_jags_data Source code
prep_jags_data.dreamer_beta Source code
prep_jags_data.dreamer_beta_binary Source code
prep_jags_data.dreamer_binary Source code
prep_jags_data.dreamer_continuous Source code
prep_jags_data.dreamer_independent_binary Source code
prep_jags_data.dreamer_independent_continuous Source code
prep_weight_data Source code
probit Source code
quantile_custom Source code
remove_scale Source code
remove_t_max Source code
remove_t_max.default Source code
remove_t_max.dreamer_longitudinal_idp Source code
return_stats_samps Source code
rjags_setup Source code
run_jags_model Source code
set_a Source code
set_a_jags Source code
set_jags_seed Source code
set_link Source code
set_scale Source code
solve_quad Source code
subset_mcmc Source code
summarize_medx Source code
summarize_post_perc Source code
summarize_samples Source code
summarize_samples_binary Source code
summarize_samples_continuous Source code
summary.dreamer Man page Source code
summary.dreamer_bma Man page Source code
throw_convergence_warn Source code
dreamer documentation built on Aug. 20, 2021, 5:08 p.m.