Global functions | |
---|---|
add_adjustment | Source code |
add_attributes | Source code |
add_cols | Source code |
add_efficacious | Source code |
add_link_attr | Source code |
add_long_hyperparms | Source code |
add_mcmc_attributes | Source code |
add_mcmc_attributes.default | Source code |
add_mcmc_attributes.dreamer_beta | Source code |
add_mcmc_attributes.dreamer_beta_binary | Source code |
add_mcmc_attributes.dreamer_binary | Source code |
add_mcmc_class | Source code |
add_mcmc_class.dreamer_beta | Source code |
add_mcmc_class.dreamer_beta_binary | Source code |
add_mcmc_class.dreamer_emax | Source code |
add_mcmc_class.dreamer_emax_binary | Source code |
add_mcmc_class.dreamer_exp | Source code |
add_mcmc_class.dreamer_exp_binary | Source code |
add_mcmc_class.dreamer_independent_binary | Source code |
add_mcmc_class.dreamer_independent_continuous | Source code |
add_mcmc_class.dreamer_linear | Source code |
add_mcmc_class.dreamer_linear_binary | Source code |
add_mcmc_class.dreamer_loglinear | Source code |
add_mcmc_class.dreamer_loglinear_binary | Source code |
add_mcmc_class.dreamer_logquad | Source code |
add_mcmc_class.dreamer_logquad_binary | Source code |
add_mcmc_class.dreamer_quad | Source code |
add_mcmc_class.dreamer_quad_binary | Source code |
add_model_name | Source code |
add_model_name_attr | Source code |
add_reference_dose | Source code |
add_time_to_title | Source code |
aggregate_binary | Source code |
aggregate_data | Source code |
any_independent | Source code |
any_independent.default | Source code |
any_independent.dreamer_bma | Source code |
assert_binary_dots | Source code |
assert_data_reference_dose | Source code |
assert_dose_len | Source code |
assert_doses | Source code |
assert_dreamer_dots | Source code |
assert_independent_dots | Source code |
assert_names | Source code |
assert_no_dots | Source code |
assert_reference_dose | Source code |
assert_w_prior | Source code |
bar_width | Source code |
base_dreamer_plot | Source code |
base_dreamer_plot_error_bar | Source code |
base_dreamer_predictive_plot | Source code |
calc_post_medx_samps | Source code |
check_aggregate | Source code |
check_binary | Source code |
check_bounds | Source code |
check_colnames | Source code |
check_data | Source code |
check_dose_index | Source code |
check_dose_length | Source code |
check_doses_data | Source code |
check_duplicate_dose | Source code |
check_ind_model_parms | Source code |
check_independent_doses | Source code |
check_independent_model | Source code |
check_len | Source code |
check_link | Source code |
check_longitudinal | Source code |
check_names | Source code |
check_no_dots | Source code |
check_plot | Source code |
check_seed_len | Source code |
check_small_bound | Source code |
check_small_bound2 | Source code |
check_time | Source code |
check_times | Source code |
common_attributes | Source code |
convergence_warnings | Source code |
create_jags_model | Source code |
diagnostics | Man page Source code |
diagnostics.dreamer_bma | Source code |
diagnostics.dreamer_mcmc | Source code |
do_call | Source code |
dreamer_data | Man page |
dreamer_data_beta | Man page Source code |
dreamer_data_beta_binary | Man page Source code |
dreamer_data_emax | Man page Source code |
dreamer_data_emax_binary | Man page Source code |
dreamer_data_exp | Man page Source code |
dreamer_data_exp_binary | Man page Source code |
dreamer_data_independent | Man page Source code |
dreamer_data_independent_binary | Man page Source code |
dreamer_data_linear | Man page Source code |
dreamer_data_linear_binary | Man page Source code |
dreamer_data_loglinear | Man page Source code |
dreamer_data_loglinear_binary | Man page Source code |
dreamer_data_logquad | Man page Source code |
dreamer_data_logquad_binary | Man page Source code |
dreamer_data_quad | Man page Source code |
dreamer_data_quad_binary | Man page Source code |
dreamer_mcmc | Man page Source code |
dreamer_mean | Source code |
dreamer_mean.dreamer_mcmc_beta | Source code |
dreamer_mean.dreamer_mcmc_beta_binary | Source code |
dreamer_mean.dreamer_mcmc_emax | Source code |
dreamer_mean.dreamer_mcmc_emax_binary | Source code |
dreamer_mean.dreamer_mcmc_exp | Source code |
dreamer_mean.dreamer_mcmc_exp_binary | Source code |
dreamer_mean.dreamer_mcmc_independent | Source code |
dreamer_mean.dreamer_mcmc_independent_binary | Source code |
dreamer_mean.dreamer_mcmc_linear | Source code |
dreamer_mean.dreamer_mcmc_linear_binary | Source code |
dreamer_mean.dreamer_mcmc_loglinear | Source code |
dreamer_mean.dreamer_mcmc_loglinear_binary | Source code |
dreamer_mean.dreamer_mcmc_logquad | Source code |
dreamer_mean.dreamer_mcmc_logquad_binary | Source code |
dreamer_mean.dreamer_mcmc_quad | Source code |
dreamer_mean.dreamer_mcmc_quad_binary | Source code |
dreamer_mean_beta | Source code |
dreamer_mean_emax | Source code |
dreamer_mean_exp | Source code |
dreamer_mean_independent | Source code |
dreamer_mean_linear | Source code |
dreamer_mean_loglinear | Source code |
dreamer_mean_logquad | Source code |
dreamer_mean_longitudinal_mcmc | Source code |
dreamer_mean_quad | Source code |
dreamer_plot_prior | Man page Source code |
dreamer_post_weights | Source code |
dreamerplot | Man page |
epll | Source code |
expand_mean_time | Source code |
fit_model | Source code |
get_args | Source code |
get_base_data | Source code |
get_data | Source code |
get_dose | Source code |
get_dose.dreamer_mcmc_beta | Source code |
get_dose.dreamer_mcmc_beta_binary | Source code |
get_dose.dreamer_mcmc_emax | Source code |
get_dose.dreamer_mcmc_emax_binary | Source code |
get_dose.dreamer_mcmc_exp | Source code |
get_dose.dreamer_mcmc_exp_binary | Source code |
get_dose.dreamer_mcmc_linear | Source code |
get_dose.dreamer_mcmc_linear_binary | Source code |
get_dose.dreamer_mcmc_loglinear | Source code |
get_dose.dreamer_mcmc_loglinear_binary | Source code |
get_dose.dreamer_mcmc_logquad | Source code |
get_dose.dreamer_mcmc_logquad_binary | Source code |
get_dose.dreamer_mcmc_quad | Source code |
get_dose.dreamer_mcmc_quad_binary | Source code |
get_doses | Source code |
get_eoi_grid | Source code |
get_epll | Source code |
get_extreme | Source code |
get_extreme.default | Source code |
get_extreme.dreamer_mcmc_beta | Source code |
get_extreme.dreamer_mcmc_independent | Source code |
get_extreme.dreamer_mcmc_logquad | Source code |
get_extreme.dreamer_mcmc_quad | Source code |
get_extreme_monotonic | Source code |
get_hyparms | Source code |
get_inequality_func | Source code |
get_jags_code | Source code |
get_jags_data | Source code |
get_jags_data_hyperparms | Source code |
get_jags_data_hyperparms.default | Source code |
get_jags_data_hyperparms.dreamer_independent | Source code |
get_jags_like_file | Source code |
get_jags_like_file.dreamer_beta | Source code |
get_jags_like_file.dreamer_beta_binary | Source code |
get_jags_like_file.dreamer_emax | Source code |
get_jags_like_file.dreamer_emax_binary | Source code |
get_jags_like_file.dreamer_exp | Source code |
get_jags_like_file.dreamer_exp_binary | Source code |
get_jags_like_file.dreamer_independent_binary | Source code |
get_jags_like_file.dreamer_independent_continuous | Source code |
get_jags_like_file.dreamer_linear | Source code |
get_jags_like_file.dreamer_linear_binary | Source code |
get_jags_like_file.dreamer_loglinear | Source code |
get_jags_like_file.dreamer_loglinear_binary | Source code |
get_jags_like_file.dreamer_logquad | Source code |
get_jags_like_file.dreamer_logquad_binary | Source code |
get_jags_like_file.dreamer_quad | Source code |
get_jags_like_file.dreamer_quad_binary | Source code |
get_jags_model | Source code |
get_jags_prior_file | Source code |
get_jags_prior_file.dreamer_beta | Source code |
get_jags_prior_file.dreamer_beta_binary | Source code |
get_jags_prior_file.dreamer_emax | Source code |
get_jags_prior_file.dreamer_emax_binary | Source code |
get_jags_prior_file.dreamer_exp | Source code |
get_jags_prior_file.dreamer_exp_binary | Source code |
get_jags_prior_file.dreamer_independent_binary | Source code |
get_jags_prior_file.dreamer_independent_continuous | Source code |
get_jags_prior_file.dreamer_linear | Source code |
get_jags_prior_file.dreamer_linear_binary | Source code |
get_jags_prior_file.dreamer_loglinear | Source code |
get_jags_prior_file.dreamer_loglinear_binary | Source code |
get_jags_prior_file.dreamer_logquad | Source code |
get_jags_prior_file.dreamer_logquad_binary | Source code |
get_jags_prior_file.dreamer_quad | Source code |
get_jags_prior_file.dreamer_quad_binary | Source code |
get_jags_seed | Source code |
get_long_model | Source code |
get_long_prior | Source code |
get_longitudinal_likelihood_file | Source code |
get_longitudinal_likelihood_file.dreamer_longitudinal_idp | Source code |
get_longitudinal_likelihood_file.dreamer_longitudinal_itp | Source code |
get_longitudinal_likelihood_file.dreamer_longitudinal_linear | Source code |
get_longitudinal_prior_file | Source code |
get_longitudinal_prior_file.dreamer_longitudinal_idp | Source code |
get_longitudinal_prior_file.dreamer_longitudinal_itp | Source code |
get_longitudinal_prior_file.dreamer_longitudinal_linear | Source code |
get_longitudinal_vnames | Source code |
get_longitudinal_vnames.default | Source code |
get_longitudinal_vnames.dreamer_longitudinal_idp | Source code |
get_longitudinal_vnames.dreamer_longitudinal_itp | Source code |
get_longitudinal_vnames.dreamer_longitudinal_linear | Source code |
get_mcmc_index | Source code |
get_med | Source code |
get_min_dose | Source code |
get_min_na | Source code |
get_model_index | Source code |
get_n_params | Source code |
get_n_params.dreamer_mcmc_beta | Source code |
get_n_params.dreamer_mcmc_beta_binary | Source code |
get_n_params.dreamer_mcmc_emax | Source code |
get_n_params.dreamer_mcmc_emax_binary | Source code |
get_n_params.dreamer_mcmc_exp | Source code |
get_n_params.dreamer_mcmc_exp_binary | Source code |
get_n_params.dreamer_mcmc_independent | Source code |
get_n_params.dreamer_mcmc_independent_binary | Source code |
get_n_params.dreamer_mcmc_linear | Source code |
get_n_params.dreamer_mcmc_linear_binary | Source code |
get_n_params.dreamer_mcmc_loglinear | Source code |
get_n_params.dreamer_mcmc_loglinear_binary | Source code |
get_n_params.dreamer_mcmc_logquad | Source code |
get_n_params.dreamer_mcmc_logquad_binary | Source code |
get_n_params.dreamer_mcmc_quad | Source code |
get_n_params.dreamer_mcmc_quad_binary | Source code |
get_n_params_longitudinal | Source code |
get_post_mean_samps | Source code |
get_progress_bar | Source code |
get_scale | Source code |
get_sum_log_probs | Source code |
get_time | Source code |
get_time_var | Source code |
get_title | Source code |
get_title_error_bars | Source code |
get_vnames | Source code |
get_vnames_model | Source code |
get_vnames_model.dreamer_beta | Source code |
get_vnames_model.dreamer_beta_binary | Source code |
get_vnames_model.dreamer_emax | Source code |
get_vnames_model.dreamer_emax_binary | Source code |
get_vnames_model.dreamer_exp | Source code |
get_vnames_model.dreamer_exp_binary | Source code |
get_vnames_model.dreamer_independent_binary | Source code |
get_vnames_model.dreamer_independent_continuous | Source code |
get_vnames_model.dreamer_linear | Source code |
get_vnames_model.dreamer_linear_binary | Source code |
get_vnames_model.dreamer_loglinear | Source code |
get_vnames_model.dreamer_loglinear_binary | Source code |
get_vnames_model.dreamer_logquad | Source code |
get_vnames_model.dreamer_logquad_binary | Source code |
get_vnames_model.dreamer_quad | Source code |
get_vnames_model.dreamer_quad_binary | Source code |
get_w_prior | Source code |
get_y | Source code |
ilogit | Source code |
iprobit | Source code |
load_jags_modules | Source code |
logit | Source code |
make_predictive_binary | Source code |
make_predictive_continuous | Source code |
make_reference_dose | Source code |
mcmc_end_msg | Source code |
mcmc_start_msg | Source code |
model | Man page |
model_beta | Man page Source code |
model_beta_binary | Man page Source code |
model_emax | Man page Source code |
model_emax_binary | Man page Source code |
model_exp | Man page Source code |
model_exp_binary | Man page Source code |
model_independent | Man page Source code |
model_independent_binary | Man page Source code |
model_linear | Man page Source code |
model_linear_binary | Man page Source code |
model_loglinear | Man page Source code |
model_loglinear_binary | Man page Source code |
model_logquad | Man page Source code |
model_logquad_binary | Man page Source code |
model_longitudinal | Man page |
model_longitudinal_idp | Man page Source code |
model_longitudinal_itp | Man page Source code |
model_longitudinal_linear | Man page Source code |
model_quad | Man page Source code |
model_quad_binary | Man page Source code |
name_models | Source code |
new_min | Source code |
pextreme | Source code |
plot.dreamer_mcmc | Man page Source code |
plot_comparison | Man page Source code |
plot_comparison.default | Man page Source code |
plot_comparison.dreamer_bma | Man page Source code |
plot_comparison_worker | Source code |
plot_data | Source code |
plot_longitudinal | Source code |
plot_trace | Man page Source code |
plot_trace.dreamer_bma | Source code |
plot_trace.dreamer_mcmc | Source code |
post_medx | Man page Source code |
post_medx.dreamer_bma | Man page Source code |
post_medx.dreamer_mcmc | Man page Source code |
post_medx.dreamer_mcmc_independent | Source code |
post_medx.dreamer_mcmc_independent_binary | Source code |
post_perc_effect | Man page Source code |
post_perc_effect.dreamer_bma | Man page Source code |
post_perc_effect.dreamer_mcmc | Man page Source code |
post_weights | Source code |
posterior | Man page Source code |
posterior.default | Source code |
posterior.dreamer_bma | Man page Source code |
posterior.dreamer_mcmc | Man page Source code |
posterior.dreamer_mcmc_independent | Man page Source code |
pr_eoi | Man page Source code |
pr_eoi_impl | Source code |
pr_med | Man page Source code |
pr_medx | Man page Source code |
prep_binary_jags_data | Source code |
prep_cont_jags_data | Source code |
prep_jags_data | Source code |
prep_jags_data.dreamer_beta | Source code |
prep_jags_data.dreamer_beta_binary | Source code |
prep_jags_data.dreamer_binary | Source code |
prep_jags_data.dreamer_continuous | Source code |
prep_jags_data.dreamer_independent_binary | Source code |
prep_jags_data.dreamer_independent_continuous | Source code |
prep_weight_data | Source code |
print.dreamer_binary | Source code |
print.dreamer_bma | Source code |
print.dreamer_continuous | Source code |
print.dreamer_mcmc | Source code |
print_model | Source code |
probit | Source code |
quantile_custom | Source code |
remove_scale | Source code |
remove_t_max | Source code |
remove_t_max.default | Source code |
remove_t_max.dreamer_longitudinal_idp | Source code |
restore_jags_modules | Source code |
return_stats_samps | Source code |
rjags_setup | Source code |
run_jags_model | Source code |
set_a | Source code |
set_a_jags | Source code |
set_link | Source code |
set_scale | Source code |
solve_quad | Source code |
subset_mcmc | Source code |
summarize_medx | Source code |
summarize_post_perc | Source code |
summarize_samples | Source code |
summarize_samples_binary | Source code |
summarize_samples_continuous | Source code |
summary.dreamer_bma | Man page Source code |
summary.dreamer_mcmc | Man page Source code |
throw_convergence_warn | Source code |
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