paged_spectro: Make a paged dynamic spectrogram similar to spectral display...

In dynaSpec: Dynamic Spectrogram Visualizations

Description

This function works on an object generated with prep_static_ggspectro, an alias for prepStaticSpec(). Video generation is very time consuming, and all the desired spectrogram parameters should be set in the prep step. The output is an mp4 video of a dynamic spectrogram video. If the input sound file was segmented in the prep step, the resulting video will be a concatenation of multiple dynamic spectrogram "pages." Each page has a sliding window revealing the part of the static spectrogram being played. Temporal width of each page is defined by the xLim parameter in prep_static_ggspectro. You can also output temporary segmented files, if desired.

Usage

paged_spectro(specParams,destFolder,vidName,framerate=30,highlightCol="#4B0C6BFF",
highlightAlpha=.6,cursorCol="#4B0C6BFF",delTemps=TRUE)

Arguments

specParams	an object returned from prep_static_ggspectro
destFolder	destination of output video; this setting overwrites setting from specParams object
vidName	expects "FileName", .mp4 not necessary; if not supplied, will be named after the file you used in prep_static_ggspectro()
framerate	by default, set to 30 (currently this is not supported, as animate doesn't honor the setting)
highlightCol	default "#4B0C6BFF" (a purple color to match the default viridis 'inferno' palette)
highlightAlpha	opacity of the highlight box; default is 0.6
cursorCol	Color of the leading edge of the highlight box; default "#4B0C6BFF"
delTemps	Default= TRUE, deletes temporary files (specs & WAV files used to create concatenated video)

Value

Nothing is returned, though progress and file save locations are output to user. Video should play after rendering.

Author(s)

Matthew R Wilkins ([e-mail])

References

Araya-Salas M & Wilkins M R. (2020). *dynaSpec: dynamic spectrogram visualizations in R*. R package version 1.0.0.

See Also

prep_static_ggspectro

Examples

## Not run: 
#show wav files included with dynaSpec
f <- list.files(pattern=".wav", full.names = TRUE, 
     path = system.file(package="dynaSpec"))

femaleBarnSwallow<-prep_static_ggspectro(f[1],destFolder=tempdir(),
                   onlyPlotSpec = FALSE, bgFlood= TRUE)
paged_spectro(femaleBarnSwallow,destFolder=tempdir())

maleBarnSwallow<-prep_static_ggspectro(f[2],destFolder=tempdir(),
                 onlyPlotSpec = FALSE, bgFlood= TRUE,min_dB=-40)

paged_spectro(femaleBarnSwallow,destFolder=tempdir())

# Make a multipage dynamic spec of a humpback whale song
# Note, we're saving PNGs of our specs in the working directory; to add
# axis labels, we set onlyPlotSpec to F, and to make the same background
# color for the entire figure, we set bgFlood= TRUE;
# The yLim is set to only go to 0.7kHz, where the sounds are for these big whales; 
#also applying an amplitude transform to boost signal.
#This is a longer file, so we're taking the first 12 seconds with crop=12
#xLim=3 means each "page" will be 3 seconds, so we'll have 4 dynamic spec pages that get combined

humpback <- prep_static_ggspectro(
"http://www.oceanmammalinst.org/songs/hmpback3.wav",destFolder=tempdir(),savePNG= FALSE,
onlyPlotSpec=FALSE,bgFlood= TRUE,yLim=c(0,.7),crop=12,xLim=3,ampTrans=3) 

#to generate multipage dynamic spec (movie), run the following
paged_spectro(humpback,destFolder=tempdir())

# see more examples at https://marce10.github.io/dynaSpec/

## End(Not run)

dynaSpec documentation built on March 10, 2021, 1:08 a.m.