dynamicTreeCut: Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
Version 1.63-1

Contains methods for detection of clusters in hierarchical clustering dendrograms.

AuthorPeter Langfelder <Peter.Langfelder@gmail.com> and Bin Zhang <binzhang.ucla@gmail.com>, with contributions from Steve Horvath <SHorvath@mednet.ucla.edu>
Date of publication2016-03-11 00:39:02
MaintainerPeter Langfelder <Peter.Langfelder@gmail.com>
LicenseGPL (>= 2)
Version1.63-1
URL http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dynamicTreeCut")

Getting started

Package overview

Popular man pages

cutreeDynamic: Adaptive Branch Pruning of Hierarchical Clustering...
cutreeDynamicTree: Dynamic Dendrogram Pruning Based on Dendrogram Only
cutreeHybrid: Hybrid Adaptive Tree Cut for Hierarchical Clustering...
dynamicTreeCut-package: Methods for Detection of Clusters in Hierarchical Clustering...
indentSpaces: Spaces for Indented Output
merge2Clusters: Merge Two Clusters
printFlush: Print Arguments and Flush the Console
See all...

All man pages Function index File listing

Man pages

cutreeDynamic: Adaptive Branch Pruning of Hierarchical Clustering...
cutreeDynamicTree: Dynamic Dendrogram Pruning Based on Dendrogram Only
cutreeHybrid: Hybrid Adaptive Tree Cut for Hierarchical Clustering...
dynamicTreeCut-package: Methods for Detection of Clusters in Hierarchical Clustering...
indentSpaces: Spaces for Indented Output
merge2Clusters: Merge Two Clusters
printFlush: Print Arguments and Flush the Console

Functions

CoreScatter Source code
CoreSize Source code
assignModuleNumber Source code
cutTreeStatic Source code
cutreeDynamic Man page Source code
cutreeDynamicTree Man page Source code
cutreeHybrid Man page Source code
dynamicTreeCut Man page
dynamicTreeCut-package Man page
indentSpaces Man page Source code
locateCluster Source code
merge2Clusters Man page Source code
nitProgInd Source code
nterpolate Source code
printFlush Man page Source code
processIndividualCluster Source code
runlengthSign Source code
shiftSequence Source code
updateProgInd Source code

Files

NAMESPACE
Changelog
R
R/PrintFlush.R
R/cutreeWrapper.R
R/cutreeDynamic.R
R/treeCut.R
MD5
DESCRIPTION
man
man/cutreeDynamicTree.Rd
man/cutreeHybrid.Rd
man/printFlush.Rd
man/merge2Clusters.Rd
man/cutreeDynamic.Rd
man/dynamicTreeCut-package.Rd
man/indentSpaces.Rd
dynamicTreeCut documentation built on May 19, 2017, 6:04 p.m.

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