connectivity.plot | R Documentation |
Plot the connectivity characteristics between groups associated to a dynamic stochastic block model.
connectivity.plot(dynsbm, Y)
dynsbm |
An object of class |
Y |
An object of class |
Interaction presence and intensity between nodes in any of the groups to the others are represented in a QxQ matrix.
The cell in line q/column l deals with the connectivity between groups q/l.
Each cell contains a curve with T time points on the x-axis corresponding to the T proportions of present edges over all the possible edges, where Q is the number of groups and T is the number of time points, and
If dynsbm
was estimated with edge.type=="binary"
, the area below the curve is filled in light blue.
If dynsbm
was estimated with edge.type=="discrete"
, the area below the curve is divided into K areas corresponding to the proportion of edges with value 1 to K (the darker blue, the greater edge intensity).
If dynsbm
was estimated with edge.type=="continuous"
, the area below the curve is filled with a colored gradient representing the mean edge intensity (the darker blue, the greater).
No return value, called for plotting.
Authors: Catherine Matias, Vincent Miele
Maintainer: Vincent Miele <vincent.miele@univ-lyon1.fr>
Catherine Matias and Vincent Miele, Statistical clustering of temporal networks through a dynamic stochastic block model, Journal of the Royal Statistical Society: Series B (2017) http://dx.doi.org/10.1111/rssb.12200 http://arxiv.org/abs/1506.07464
Vincent Miele and Catherine Matias, Revealing the hidden structure of dynamic ecological networks, Royal Society Open Science (2017) http://dx.doi.org/10.1098/rsos.170251 https://arxiv.org/abs/1701.01355
####################
## 1 - binary case
data(simdataT5Q4N40binary)
## estimation for Q=1..5 groups
## better to use nstart>1 starting points
## but estimation can take 1-2 minutes
list.dynsbm <- select.dynsbm(simdataT5Q4N40binary,
Qmin=1, Qmax=5, edge.type="binary", nstart=1)
## selection of Q=4
dynsbm <- list.dynsbm[[4]]
## plotting intra/inter connectivity patterns
connectivity.plot(dynsbm, simdataT5Q4N40binary)
####################
## 2 - continuous case
data(simdataT5Q4N40continuous)
## estimation for Q=1..5 groups
## better to use nstart>1 starting points
## but estimation can take 1-2 minutes
list.dynsbm <- select.dynsbm(simdataT5Q4N40continuous,
Qmin=1, Qmax=5, edge.type="continuous", nstart=1)
## selection of Q=4
dynsbm <- list.dynsbm[[4]]
## plotting intra/inter connectivity patterns
connectivity.plot(dynsbm, simdataT5Q4N40continuous)
####################
## 3 - discrete case
data(simdataT5Q4N40discrete)
## estimation for Q=1..5 groups
## better to use nstart>1 starting points
## but estimation can take 1-2 minutes
list.dynsbm <- select.dynsbm(simdataT5Q4N40discrete,
Qmin=1, Qmax=5, edge.type="discrete", K=4, nstart=1)
## selection of Q=4
dynsbm <- list.dynsbm[[4]]
## plotting intra/inter connectivity patterns
connectivity.plot(dynsbm, simdataT5Q4N40discrete)
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