eVenn-package: A Powerful Tool to Quickly Compare Huge Lists and Draw Venn...

In eVenn: A Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams

Description

Compare lists (from 2 to infinite) and plot the results in a Venn diagram if (N<=4) with regulation details. It allows to produce a complete annotated file, merging the annotations of the compared lists. It is also possible to compute an overlaps table to show the overlaps proportions of all the couples of lists and draw proportional Venn diagrams.

Details

Package:	eVenn
Type:	Package
Version:	2.4
Date:	2017-09-07
License:	GPL
LazyLoad:	yes

Author(s)

Author & Maintainer: Nicolas Cagnard <[e-mail]>

References

http://blog.mrbioinfo.com/

Examples

library(eVenn)
YNdisplay = TRUE	# Allows commentaries and display of the main steps of the process

#	Matrix of binary data
   data(Data_Binary_Matrix)
   evenn(matLists=Data_Binary_Matrix, display=YNdisplay, CompName="Binary_Matrix")

#	Matrix of folds
#   data(Data_Matrix_Of_Folds)
#   evenn(matLists=Data_Matrix_Of_Folds, display=YNdisplay, CompName="Matrix_Of_Folds")

#	Matrix of ratios
#   data(Data_Matrix_Of_Ratios)
#   evenn(matLists=Data_Matrix_Of_Ratios, display=YNdisplay, CompName="Matrix_Of_Ratios")

#	List of 2, 3 or 4 matrix w/wo modulations and w/wo profils data

   data(Data_Lists)

#   evenn(matLists=Data_Lists[c("List_1", "List_2", "List_3", "List_4")], annot=TRUE,
#    display=YNdisplay, CompName="Lists_4")

#   evenn(matLists=Data_Lists[c("List_1", "List_2", "List_3", "List_4")], ud=TRUE,
#    annot=TRUE, display=YNdisplay, CompName="Lists_4_UD")

#   evenn(matLists=Data_Lists[c("List_1", "List_2", "List_3", "List_4", "DataMoy")],
#    ud=TRUE, annot=TRUE, Profils=TRUE, display=YNdisplay, CompName="Lists_4_UD_Profils")

Example output

        ,.-.,                                                                          
      .`     `.                                                                        
     /.-., ,.-.`            *       *                                 ****         *   
   .`    .`.    `.     ***   *     *   ***    ****   ****    *     * *    *      * *   
  / `.  /   `.  / `  *     *  *   *  *     * *    * *    *    *   *      *      *  *   
 |    ',_____,'    | ******   *   *  ******  *    * *    *     * *      *      *   *   
 `.     `   /     /  *         * *   *       *    * *    *     * *    *       *******  
   ',    '_'    ,'    *****     *     *****  *    * *    *      *    ****** *      *   
     `'-'` `'-'`                                                                       
Default results path is: 
	/work/tmp/Venn.diagrams/
The results will be placed here: 
	/work/tmp/Venn.diagrams//Venn_Binary_Matrix
     => Source = binary matrix
     => NutShell
     => Graphic

eVenn documentation built on Sept. 14, 2017, 5:02 p.m.