easyPubMed: Search and Retrieve Scientific Publication Records from PubMed
Version 2.3

Query NCBI Entrez and retrieve PubMed records in XML or text format. Process PubMed records by extracting and aggregating data from selected fields. A large number of records can be easily downloaded via this simple-to-use interface to the NCBI PubMed API.

AuthorDamiano Fantini
Date of publication2017-02-27 08:15:26
MaintainerDamiano Fantini <damiano.fantini@gmail.com>
LicenseGPL-2
Version2.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("easyPubMed")

Getting started

Package overview
Retrieving and Processing PubMed Records via easyPubMed
Retrieving and Processing PubMed Records via easyPubMed

Popular man pages

article_to_df: Extract Data from a PubMed Record
batch_pubmed_download: Download PubMed Records in XML or TXT Format
custom_grep: Retrieve Text Between XML Tags
easyPubMed-package: Retrieve and Process Scientific Publication Records from...
fetch_pubmed_data: Retrieve PubMed Data in XML or TXT Format
get_pubmed_ids: Simple PubMed Record Search
table_articles_byAuth: Extract Publication and Affiliation Data from PubMed Records
See all...

All man pages Function index File listing

Man pages

articles_to_list: Cast PubMed Data into a List of Articles
article_to_df: Extract Data from a PubMed Record
batch_pubmed_download: Download PubMed Records in XML or TXT Format
custom_grep: Retrieve Text Between XML Tags
easyPubMed-package: Retrieve and Process Scientific Publication Records from...
fetch_pubmed_data: Retrieve PubMed Data in XML or TXT Format
get_pubmed_ids: Simple PubMed Record Search
table_articles_byAuth: Extract Publication and Affiliation Data from PubMed Records
trim_address: Trim and Format Address Information

Functions

Files

inst
inst/doc
inst/doc/easyPM_vignette_html.Rmd
inst/doc/easyPM_vignette_html.html
inst/doc/easyPM_vignette_pdf.Rmd
inst/doc/easyPM_vignette_pdf.R
inst/doc/easyPM_vignette_html.R
inst/doc/easyPM_vignette_pdf.pdf
NAMESPACE
R
R/custom_grep.R
R/articles_to_list.R
R/trim_address.R
R/table_articles_byAuth.R
R/get_pubmed_ids.R
R/fetch_pubmed_data.R
R/easyPubMed-internal.R
R/article_to_df.R
R/batch_pubmed_download.R
vignettes
vignettes/easyPM_vignette_html.Rmd
vignettes/easyPM_vignette_pdf.html
vignettes/easyPM_vignette_pdf.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/article_to_df.Rd
man/table_articles_byAuth.Rd
man/batch_pubmed_download.Rd
man/get_pubmed_ids.Rd
man/trim_address.Rd
man/easyPubMed-package.Rd
man/custom_grep.Rd
man/fetch_pubmed_data.Rd
man/articles_to_list.Rd
easyPubMed documentation built on May 20, 2017, 2:50 a.m.

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