my.bisec: Bisection method to find the root In ebGenotyping: Genotyping and SNP Detection using Next Generation Sequencing Data

Description

This function is to apply bisection method to find the root of a function f.

Usage

 `1` ```my.bisec(f, int.l, int.u, eps = 1e-06) ```

Arguments

 `f` the function for which the root is sought. `int.l` a vector containing the lower bound of the interval to be searched for the root. The length of the vector is the same as that of the input of function f. `int.u` a vector containing the upper bound of the interval to be searched for the root. The length of the vector is the same as that of the input of function f. `eps` a single value: a threshold to control the convergence criterion. The default is 1e-06.

Details

Both int.l and int.u must be specified: the upper bound must be strictly larger than the lower bound.

The function f must be well defined without invalid output(NA, nan, Inf, etc).

The length of the input of function f, the output of function f, int.l and int.u must be the same.

Value

a vector containing the root of the function. If there is no root in the interval (int.l, int.u), lower bound of the interval will be returned.

Author(s)

Na You <[email protected]> and Gongyi Huang<[email protected]>

References

Na You and Gongyi Huang.(2016) An Empirical Bayes Method for Genotyping and SNP detection Using Multi-sample Next-generation Sequencing Data.

Examples

 ```1 2 3 4 5``` ```f <- function(x){ a <- 1:10 return(x-a) } my.bisec(f=f, int.l=rep(-1,10), int.u=rep(11,10), eps = 1e-08) ```

ebGenotyping documentation built on May 30, 2017, 12:18 a.m.